CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX89999
CDX92368
CDX97739
CDY00208
CDY05939
CDY08139
CDY09128
CDY15210
CDY15212
CDY15214
CDY15215
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G43520.1	CDX89999	AT1G01010.1	21798944
AT3G43520.1	CDY15210	AT1G01010.1	21798944
AT3G43520.1	CDY15212	AT1G01010.1	21798944
AT3G43520.1	CDY15214	AT1G01010.1	21798944
AT3G43520.1	CDY15215	AT1G01010.1	21798944
AT3G43520.1	CDX97739	AT3G16310.1	21798944
AT3G43520.1	CDY30157	AT3G16310.1	21798944
AT3G43520.1	CDY00208	AT3G49530.1	21798944
AT3G43520.1	CDY05939	AT3G49530.1	21798944
AT3G43520.1	CDY08139	AT3G49530.1	21798944
AT3G43520.1	CDX70995	AT5G22290.1	21798944
AT3G43520.1	CDX88803	AT5G22290.1	21798944
AT3G43520.1	CDX92368	AT5G22290.1	21798944
AT3G43520.1	CDY09128	AT5G22290.1	21798944
AT3G43520.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019447.1-P	Field mustard	plastid	100.0	100.0
CDY44845	Canola	plastid	82.19	76.92
GSMUA_Achr5P24090_001	Banana	extracellular, golgi, plasma membrane	30.59	62.04
HORVU2Hr1G112370.1	Barley	golgi, mitochondrion, plastid	26.94	58.42
AT3G43520.1	Thale cress	plastid	63.93	58.33
GSMUA_Achr3P05290_001	Banana	extracellular	28.31	55.86
PGSC0003DMT400040174	Potato	cytosol, peroxisome, plastid	41.1	52.63
CDY11499	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	28.31	45.93
TraesCS2D01G507100.1	Wheat	golgi	42.47	45.15
TraesCS2A01G506400.1	Wheat	plastid	42.47	45.15
TraesCS2B01G534700.1	Wheat	golgi	41.55	44.17
EES12994	Sorghum	plastid	41.55	43.75
PGSC0003DMT400040170	Potato	plastid	47.95	42.68
PGSC0003DMT400040171	Potato	plastid	47.95	42.68
CDX76725	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	28.31	42.47
KRH19425	Soybean	plastid	42.01	40.35
KRH02516	Soybean	plastid	40.64	40.09
Solyc11g073240.1.1	Tomato	plastid	44.29	38.96
Zm00001d002028_P001	Maize	plastid	32.42	38.38
VIT_07s0130g00480.t01	Wine grape	plastid	42.47	37.8
HORVU2Hr1G112380.1	Barley	peroxisome	32.88	33.18
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, plasma membrane	13.24	32.95
Zm00001d026478_P001	Maize	extracellular, plastid	22.37	31.41
GSMUA_AchrUn_...	Banana	mitochondrion	12.79	29.79
Os04t0653100-01	Rice	plasma membrane, plastid	40.64	28.99

Protein Annotations

EnsemblPlants:CDY30952	EnsemblPlantsGene:GSBRNA2T00046523001	Gene3D:1.20.58.1140	GO:A0A078H0E9	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM14	PANTHER:PTHR12668	PANTHER:PTHR12668:SF5	PFAM:PF03647	ProteinID:CDY30952
ProteinID:CDY30952.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000253F162	UniProt:A0A078H0E9	MapMan:24.2.22

Description

BnaA06g19610DBnaA06g19610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0E9]

Coordinates

chrLK032264:-:400932..402083

Molecular Weight (calculated)

22361.3 Da

IEP (calculated)

9.472

GRAVY (calculated)

0.287

Length

219 amino acids

Sequence
(BLAST)

001: MAELLLSSSA QSSLRPRGIL SFNTPSASPI RSLAFTSSKG FHPLAFKSAH QRLITSITVN CVDSGAKAVE VEPVIGGGGG GGIGGDKFGG GGGGGDDNDE
101: GEAGGEEETP LPLSMSQKLT LGYAFLVGVG GLMGYLKSGS QKSLLAGGLS AAVLLFVFRE LPTKPVLAST IGVVMAGALT WVMGTRYMGS KKIFPAGVVS
201: FMSFIMTGGY IHGIMRSLH

Best Arabidopsis Sequence Match ( AT3G43520.1 )
(BLAST)

001: MADLILSSSS AQSSLLHVRP NHYLLNTSTA SPIRSVRFQN SNGFHPLAFA SGHRRLPLGA VVPSDSTKTI TSTITANCVD SGVKAVEVEP TIDYGGGGGI
101: GGDKFGGGGG GGDGNDDGGE DDKEESDGKK STPLSMSQKL TLGYAFLVGV GGLMGYLKSG SQKSLLAGGL SAAVLLYVFS QLPTKPVLAS TVGVVMAGAL
201: MYVMGTRYMR SKKIFPAGVV SIMSFIMTGG YIHGIMRSLH

Arabidopsis Description

FAX2Protein FATTY ACID EXPORT 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.