Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49530.1 | CDY42278 | AT5G19570.1 | 21798944 |
| AT3G49530.1 | CDY44927 | AT5G19570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019599.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX86970 | Canola | nucleus | 68.75 | 93.99 |
| CDX86969 | Canola | cytosol | 21.99 | 88.78 |
| CDY08139 | Canola | nucleus | 72.92 | 67.89 |
| CDY05939 | Canola | nucleus | 70.83 | 66.09 |
| AT3G49530.1 | Thale cress | nucleus | 70.37 | 64.82 |
| CDY70627 | Canola | cytosol | 19.44 | 50.91 |
| CDY19828 | Canola | nucleus | 52.31 | 50.79 |
| CDX88115 | Canola | cytosol | 51.62 | 50.34 |
| CDX80455 | Canola | nucleus | 51.62 | 48.9 |
| CDY41351 | Canola | plastid | 18.75 | 48.5 |
| GSMUA_Achr11P... | Banana | cytosol | 20.37 | 46.56 |
| CDY71253 | Canola | cytosol | 18.98 | 46.07 |
| CDX92153 | Canola | nucleus | 19.44 | 37.17 |
| CDX95832 | Canola | nucleus | 19.44 | 37.17 |
| GSMUA_Achr2P11810_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 23.38 | 34.83 |
| CDX90431 | Canola | nucleus | 21.3 | 32.17 |
| CDY10502 | Canola | nucleus | 22.69 | 31.92 |
| CDY01508 | Canola | nucleus | 21.06 | 31.82 |
| CDY42413 | Canola | nucleus | 22.45 | 31.39 |
| CDX77674 | Canola | nucleus | 20.37 | 30.99 |
| CDX67739 | Canola | nucleus | 22.22 | 30.87 |
| CDX78816 | Canola | nucleus | 20.6 | 30.48 |
| CDY44498 | Canola | nucleus | 20.6 | 30.48 |
| CDY63046 | Canola | nucleus | 20.37 | 30.34 |
| CDY59580 | Canola | nucleus | 20.14 | 29.59 |
| CDX87703 | Canola | nucleus | 19.91 | 29.25 |
| CDY46459 | Canola | nucleus | 20.14 | 28.62 |
| KRH53649 | Soybean | nucleus | 38.66 | 27.93 |
| KRH64275 | Soybean | nucleus | 38.89 | 27.86 |
| CDX87118 | Canola | nucleus | 53.47 | 27.76 |
| KRH16970 | Soybean | nucleus | 37.73 | 27.63 |
| CDX84070 | Canola | nucleus | 18.06 | 27.56 |
| KRH72602 | Soybean | nucleus | 37.5 | 27.5 |
| CDY43785 | Canola | nucleus | 21.76 | 27.33 |
| CDY66060 | Canola | nucleus | 18.06 | 27.27 |
| CDY67205 | Canola | nucleus | 18.06 | 27.27 |
| CDX84485 | Canola | nucleus | 21.76 | 27.17 |
| CDY44793 | Canola | nucleus | 21.99 | 27.14 |
| CDX71459 | Canola | cytosol, golgi, nucleus | 21.06 | 26.38 |
| CDY04487 | Canola | cytosol | 21.06 | 26.38 |
| CDX81124 | Canola | nucleus | 20.6 | 26.02 |
| CDX70995 | Canola | cytosol | 19.68 | 25.45 |
| CDX88803 | Canola | cytosol | 19.44 | 24.93 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 19.44 | 24.78 |
| CDX92368 | Canola | cytosol | 19.21 | 24.78 |
| Solyc06g073050.2.1 | Tomato | nucleus | 33.8 | 24.54 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 18.98 | 24.26 |
| VIT_16s0098g00760.t01 | Wine grape | mitochondrion | 36.11 | 24.22 |
| CDY09128 | Canola | cytosol | 19.21 | 24.2 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 18.98 | 23.91 |
| PGSC0003DMT400069511 | Potato | nucleus | 34.72 | 23.81 |
| PGSC0003DMT400001498 | Potato | nucleus | 34.26 | 23.2 |
| GSMUA_Achr1P03560_001 | Banana | nucleus | 30.79 | 23.17 |
| Solyc03g080090.2.1 | Tomato | nucleus | 33.33 | 22.89 |
| GSMUA_Achr4P29170_001 | Banana | nucleus | 30.32 | 22.78 |
| CDY41352 | Canola | nucleus | 21.99 | 22.57 |
| CDY26922 | Canola | nucleus | 32.41 | 22.01 |
| CDY00676 | Canola | nucleus | 21.76 | 21.96 |
| CDY66161 | Canola | nucleus | 32.18 | 21.89 |
| CDY41353 | Canola | nucleus | 21.76 | 21.32 |
| CDX73920 | Canola | nucleus | 21.99 | 21.25 |
| CDY00946 | Canola | nucleus | 21.99 | 21.06 |
| CDY00677 | Canola | nucleus | 21.53 | 20.9 |
| CDY08601 | Canola | nucleus, plastid | 21.99 | 20.88 |
| CDX78356 | Canola | nucleus | 17.36 | 20.66 |
| CDX69911 | Canola | nucleus | 20.83 | 20.55 |
| CDY28745 | Canola | cytosol | 22.69 | 20.5 |
| CDY43143 | Canola | nucleus | 22.69 | 20.5 |
| OQU79937 | Sorghum | nucleus | 31.25 | 20.33 |
| HORVU7Hr1G070780.5 | Barley | nucleus | 33.1 | 20.31 |
| CDY21575 | Canola | nucleus | 20.37 | 20.28 |
| TraesCS7A01G299600.3 | Wheat | nucleus | 32.87 | 20.26 |
| TraesCS7B01G187600.1 | Wheat | nucleus | 32.87 | 20.26 |
| Zm00001d024543_P001 | Maize | nucleus | 31.02 | 20.18 |
| TraesCS7D01G295100.1 | Wheat | nucleus | 32.41 | 20.14 |
| CDY34716 | Canola | nucleus | 13.66 | 20.07 |
| Zm00001d049540_P002 | Maize | cytosol | 30.56 | 19.97 |
| CDX73921 | Canola | cytosol, nucleus, plastid | 21.06 | 19.96 |
| CDY16943 | Canola | nucleus | 22.92 | 19.92 |
| CDX78734 | Canola | cytosol | 22.45 | 19.8 |
| CDY61762 | Canola | cytosol, nucleus, plastid | 23.61 | 19.65 |
| CDX70745 | Canola | cytosol | 22.45 | 19.64 |
| CDY49932 | Canola | nucleus | 21.53 | 19.42 |
| CDY14157 | Canola | cytosol, nucleus, vacuole | 23.15 | 19.38 |
| Os08t0157900-01 | Rice | nucleus, plasma membrane | 32.64 | 19.34 |
| CDY41354 | Canola | cytosol, nucleus, plastid | 23.15 | 18.62 |
| CDY44853 | Canola | cytosol, nucleus, vacuole | 24.07 | 18.57 |
| CDX70227 | Canola | cytosol, nucleus, vacuole | 23.61 | 18.41 |
| CDY25752 | Canola | nucleus | 21.53 | 18.27 |
| CDY60870 | Canola | nucleus | 24.31 | 18.2 |
| CDX91785 | Canola | nucleus | 22.69 | 18.18 |
| CDX93723 | Canola | nucleus | 23.15 | 17.99 |
| CDY58437 | Canola | cytosol, nucleus, plastid | 23.15 | 17.99 |
| CDY11289 | Canola | cytosol, nucleus, vacuole | 23.38 | 17.84 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane | 31.25 | 17.79 |
| CDY16427 | Canola | nucleus | 24.31 | 17.65 |
| CDY48632 | Canola | cytosol, nucleus, plastid | 22.92 | 17.58 |
| CDX73305 | Canola | nucleus | 21.06 | 17.47 |
| CDY70628 | Canola | golgi | 15.74 | 17.17 |
| CDY12515 | Canola | plastid | 21.53 | 17.06 |
| CDY28401 | Canola | cytosol, nucleus, plastid | 21.53 | 17.03 |
| CDY28397 | Canola | nucleus | 21.99 | 16.44 |
| CDX73304 | Canola | nucleus | 21.99 | 16.3 |
| CDY21216 | Canola | nucleus | 14.35 | 14.42 |
| CDX69392 | Canola | nucleus | 8.56 | 8.64 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078ELG5 | EnsemblPlants:CDY00208 | ProteinID:CDY00208 | ProteinID:CDY00208.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00109745001 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF54 | SUPFAM:SSF101941 | TMHMM:TMhelix | UniParc:UPI000253EF73 | SEG:seg |
Description
BnaA06g21090D
Coordinates
chrLK031917:-:139305..141310
Molecular Weight (calculated)
48500.0 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.571
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQNIKELSL DSLPVGLRFR PTDEELVRYY LRRKINGHDD DVKAIREIDI CKCEPWDLPD FSAIKTKDSE WLFFSPLDRK YPTGSRQNRS TIAGHWKATG
101: KDRKIKSGKN NVIGLKRTLV FHSGRAPKGT RTNWVMHEYR ATEHDLSGTN PGQNPFVICK LFKKQDPSLV DEAVSSPTSS PDETKVVVEA QGVKPESSLV
201: ISGDSRNGVW NEATTSKLGD LDWLSFPELE SLTVFSPLHE LGSSSSSFNA FLQPSSSDHD NTFQIQTQYG TNEEDTDVSR FLNSVLDFQD DLEDQDFVFP
301: SEFDGAVPDQ TAPAYQQQRS AGDMSDDVSR TGIKLQPRRE QPEGCSTDYI IHGNASRRLR LQTIKREVED TDGKAIKKGK LMRSKNRTGF LFKKIISVRC
401: SYGGLLRAAV VAVLFLISVC SLTADFRASL MI
101: KDRKIKSGKN NVIGLKRTLV FHSGRAPKGT RTNWVMHEYR ATEHDLSGTN PGQNPFVICK LFKKQDPSLV DEAVSSPTSS PDETKVVVEA QGVKPESSLV
201: ISGDSRNGVW NEATTSKLGD LDWLSFPELE SLTVFSPLHE LGSSSSSFNA FLQPSSSDHD NTFQIQTQYG TNEEDTDVSR FLNSVLDFQD DLEDQDFVFP
301: SEFDGAVPDQ TAPAYQQQRS AGDMSDDVSR TGIKLQPRRE QPEGCSTDYI IHGNASRRLR LQTIKREVED TDGKAIKKGK LMRSKNRTGF LFKKIISVRC
401: SYGGLLRAAV VAVLFLISVC SLTADFRASL MI
001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS
Arabidopsis Description
NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.