Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00208 | Canola | nucleus | 93.99 | 68.75 |
| CDY70627 | Canola | cytosol | 26.58 | 50.91 |
| CDY08139 | Canola | nucleus | 72.47 | 49.35 |
| CDY05939 | Canola | nucleus | 71.84 | 49.03 |
| CDY41351 | Canola | plastid | 25.63 | 48.5 |
| CDY71253 | Canola | cytosol | 26.27 | 46.63 |
| CDX88115 | Canola | cytosol | 55.7 | 39.73 |
| CDY19828 | Canola | nucleus | 54.75 | 38.88 |
| CDX80455 | Canola | nucleus | 55.38 | 38.38 |
| CDX95832 | Canola | nucleus | 26.9 | 37.61 |
| CDX92153 | Canola | nucleus | 26.9 | 37.61 |
| CDX90431 | Canola | nucleus | 29.43 | 32.52 |
| CDY01508 | Canola | nucleus | 29.11 | 32.17 |
| CDX77674 | Canola | nucleus | 28.16 | 31.34 |
| CDY10502 | Canola | nucleus | 30.06 | 30.94 |
| CDY44498 | Canola | nucleus | 28.48 | 30.82 |
| CDX78816 | Canola | nucleus | 28.48 | 30.82 |
| CDY63046 | Canola | nucleus | 28.16 | 30.69 |
| CDY42413 | Canola | nucleus | 29.75 | 30.42 |
| CDX67739 | Canola | nucleus | 29.75 | 30.23 |
| CDY59580 | Canola | nucleus | 27.85 | 29.93 |
| CDX87703 | Canola | nucleus | 27.53 | 29.59 |
| CDX84070 | Canola | nucleus | 25.63 | 28.62 |
| CDY46459 | Canola | nucleus | 27.53 | 28.62 |
| CDY67205 | Canola | nucleus | 25.63 | 28.32 |
| CDY66060 | Canola | nucleus | 25.63 | 28.32 |
| CDY43785 | Canola | nucleus | 30.38 | 27.91 |
| CDX84485 | Canola | nucleus | 30.38 | 27.75 |
| CDY44793 | Canola | nucleus | 29.43 | 26.57 |
| CDX81124 | Canola | nucleus | 27.85 | 25.73 |
| CDX70995 | Canola | cytosol | 26.58 | 25.15 |
| CDX71459 | Canola | cytosol, golgi, nucleus | 27.22 | 24.93 |
| CDY04487 | Canola | cytosol | 27.22 | 24.93 |
| CDX92368 | Canola | cytosol | 26.27 | 24.78 |
| CDX88803 | Canola | cytosol | 26.27 | 24.63 |
| CDY09128 | Canola | cytosol | 26.58 | 24.49 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 26.27 | 24.48 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 25.63 | 23.96 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 25.95 | 23.91 |
| CDX87118 | Canola | nucleus | 56.33 | 21.39 |
| CDY00676 | Canola | nucleus | 28.8 | 21.26 |
| CDY41352 | Canola | nucleus | 28.16 | 21.14 |
| CDX73920 | Canola | nucleus | 28.8 | 20.36 |
| CDY41353 | Canola | nucleus | 28.16 | 20.18 |
| CDX78356 | Canola | nucleus | 23.1 | 20.11 |
| CDY00677 | Canola | nucleus | 28.16 | 20.0 |
| CDY00946 | Canola | nucleus | 28.48 | 19.96 |
| CDX69911 | Canola | nucleus | 27.53 | 19.86 |
| CDY66161 | Canola | nucleus | 39.87 | 19.84 |
| CDY26922 | Canola | nucleus | 39.87 | 19.81 |
| CDY08601 | Canola | nucleus, plastid | 28.48 | 19.78 |
| CDY34716 | Canola | nucleus | 18.35 | 19.73 |
| CDY21575 | Canola | nucleus | 26.9 | 19.59 |
| CDX73921 | Canola | cytosol, nucleus, plastid | 27.85 | 19.3 |
| CDY28745 | Canola | cytosol | 28.8 | 19.04 |
| CDY43143 | Canola | nucleus | 28.8 | 19.04 |
| CDY16943 | Canola | nucleus | 29.75 | 18.91 |
| CDX78734 | Canola | cytosol | 29.11 | 18.78 |
| CDX70745 | Canola | cytosol | 29.11 | 18.62 |
| CDY49932 | Canola | nucleus | 27.85 | 18.37 |
| CDY61762 | Canola | cytosol, nucleus, plastid | 30.06 | 18.3 |
| CDY14157 | Canola | cytosol, nucleus, vacuole | 29.75 | 18.22 |
| CDY60870 | Canola | nucleus | 32.91 | 18.02 |
| CDY41354 | Canola | cytosol, nucleus, plastid | 29.75 | 17.5 |
| CDY16427 | Canola | nucleus | 32.91 | 17.48 |
| CDY44853 | Canola | cytosol, nucleus, vacuole | 30.7 | 17.32 |
| CDX70227 | Canola | cytosol, nucleus, vacuole | 30.06 | 17.15 |
| CDY58437 | Canola | cytosol, nucleus, plastid | 29.75 | 16.91 |
| CDY25752 | Canola | nucleus | 27.22 | 16.9 |
| CDY11289 | Canola | cytosol, nucleus, vacuole | 30.06 | 16.78 |
| CDX93723 | Canola | nucleus | 29.11 | 16.55 |
| CDX73305 | Canola | nucleus | 27.22 | 16.51 |
| CDX91785 | Canola | nucleus | 27.85 | 16.33 |
| CDY48632 | Canola | cytosol, nucleus, plastid | 28.8 | 16.16 |
| CDY12515 | Canola | plastid | 27.53 | 15.96 |
| CDY70628 | Canola | golgi | 19.94 | 15.91 |
| CDY28401 | Canola | cytosol, nucleus, plastid | 26.9 | 15.57 |
| CDY28397 | Canola | nucleus | 26.9 | 14.71 |
| CDX73304 | Canola | nucleus | 26.9 | 14.58 |
| CDY21216 | Canola | nucleus | 18.04 | 13.26 |
| CDX69392 | Canola | nucleus | 10.44 | 7.71 |
| HORVU5Hr1G086730.1 | Barley | nucleus | 5.06 | 5.26 |
| HORVU0Hr1G021100.1 | Barley | cytosol, plastid | 8.23 | 4.57 |
| CDX86969 | Canola | cytosol | 0.95 | 2.8 |
| HORVU5Hr1G086780.2 | Barley | cytosol, nucleus | 1.27 | 1.8 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078DCL1 | EnsemblPlants:CDX86970 | ProteinID:CDX86970 | ProteinID:CDX86970.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00145796001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF54 | SUPFAM:SSF101941 | UniParc:UPI0004EF12E8 | SEG:seg | : | : |
Description
BnaC03g52400D
Coordinates
chrLK031848:+:978635..981151
Molecular Weight (calculated)
35574.3 Da
IEP (calculated)
5.459
GRAVY (calculated)
-0.711
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQNIKELSL DSLPVGLRFR PTDEELVRYY LRRKINGHDD DVKAIREIDI CKCEPWDLPD FSAIKTKDSE WLFFCPLDRK YPNGSRQNRS TIAGHWKATG
101: KDRKIKSGKN NVIGLKRTLV FHSGRAPKGT RTNWVMHEYR ATEQDLSGTS PGQNPFVICK LFKKQDPSLV DEAASSPTSS PDETKAVAKA QGVKPESSLV
201: ISGDSHNGAC REATTSKLGD LDWLSFPELE SLTVFSPLHE LGSSSFNAFL QPSSSDFSGN HDNTFRIQTQ YRTNEEDTDV SRFLNSVLDF QDDLEDQDFV
301: FPSEFDGAVP DQVRNS
101: KDRKIKSGKN NVIGLKRTLV FHSGRAPKGT RTNWVMHEYR ATEQDLSGTS PGQNPFVICK LFKKQDPSLV DEAASSPTSS PDETKAVAKA QGVKPESSLV
201: ISGDSHNGAC REATTSKLGD LDWLSFPELE SLTVFSPLHE LGSSSFNAFL QPSSSDFSGN HDNTFRIQTQ YRTNEEDTDV SRFLNSVLDF QDDLEDQDFV
301: FPSEFDGAVP DQVRNS
001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REVRITPTF
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REVRITPTF
Arabidopsis Description
NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.