Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49530.1 | CDY42278 | AT5G19570.1 | 21798944 |
| AT3G49530.1 | CDY44927 | AT5G19570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08139 | Canola | nucleus | 90.28 | 90.09 |
| CDX86969 | Canola | cytosol | 16.63 | 71.96 |
| CDX86970 | Canola | nucleus | 49.03 | 71.84 |
| CDY00208 | Canola | nucleus | 66.09 | 70.83 |
| AT3G49530.1 | Thale cress | nucleus | 69.55 | 68.66 |
| CDX88115 | Canola | cytosol | 50.54 | 52.82 |
| CDX80455 | Canola | nucleus | 50.97 | 51.75 |
| CDY19828 | Canola | nucleus | 49.68 | 51.69 |
| CDY70627 | Canola | cytosol | 17.93 | 50.3 |
| CDY41351 | Canola | plastid | 17.93 | 49.7 |
| GSMUA_Achr11P... | Banana | cytosol | 20.09 | 49.21 |
| CDY71253 | Canola | cytosol | 17.49 | 45.51 |
| GSMUA_Achr2P11810_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 23.97 | 38.28 |
| CDX92153 | Canola | nucleus | 18.14 | 37.17 |
| CDX95832 | Canola | nucleus | 18.14 | 37.17 |
| CDX90431 | Canola | nucleus | 20.09 | 32.52 |
| CDY10502 | Canola | nucleus | 21.17 | 31.92 |
| CDY01508 | Canola | nucleus | 19.65 | 31.82 |
| CDY42413 | Canola | nucleus | 20.73 | 31.07 |
| CDX77674 | Canola | nucleus | 19.01 | 30.99 |
| CDX67739 | Canola | nucleus | 20.73 | 30.87 |
| CDX78816 | Canola | nucleus | 19.22 | 30.48 |
| CDY44498 | Canola | nucleus | 19.22 | 30.48 |
| CDY63046 | Canola | nucleus | 19.01 | 30.34 |
| CDY46459 | Canola | nucleus | 19.87 | 30.26 |
| CDY66060 | Canola | nucleus | 18.36 | 29.72 |
| CDY67205 | Canola | nucleus | 18.36 | 29.72 |
| CDX84070 | Canola | nucleus | 18.14 | 29.68 |
| CDY59580 | Canola | nucleus | 18.79 | 29.59 |
| CDX71459 | Canola | cytosol, golgi, nucleus | 22.03 | 29.57 |
| CDY04487 | Canola | cytosol | 21.81 | 29.28 |
| CDX87703 | Canola | nucleus | 18.57 | 29.25 |
| CDX87118 | Canola | nucleus | 50.97 | 28.37 |
| CDX70995 | Canola | cytosol | 19.87 | 27.54 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 20.09 | 27.43 |
| KRH53649 | Soybean | nucleus | 35.42 | 27.42 |
| KRH64275 | Soybean | nucleus | 35.42 | 27.2 |
| KRH72602 | Soybean | nucleus | 34.56 | 27.16 |
| CDY43785 | Canola | nucleus | 20.09 | 27.03 |
| CDX88803 | Canola | cytosol | 19.65 | 27.0 |
| KRH16970 | Soybean | nucleus | 34.34 | 26.95 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 19.65 | 26.92 |
| CDX84485 | Canola | nucleus | 20.09 | 26.88 |
| Solyc06g073050.2.1 | Tomato | nucleus | 33.91 | 26.39 |
| CDX92368 | Canola | cytosol | 19.01 | 26.27 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 19.44 | 26.24 |
| CDY44793 | Canola | nucleus | 19.65 | 26.0 |
| CDY09128 | Canola | cytosol | 19.22 | 25.95 |
| CDX81124 | Canola | nucleus | 18.79 | 25.44 |
| PGSC0003DMT400069511 | Potato | nucleus | 34.13 | 25.08 |
| VIT_16s0098g00760.t01 | Wine grape | mitochondrion | 34.77 | 25.0 |
| PGSC0003DMT400001498 | Potato | nucleus | 33.48 | 24.29 |
| Solyc03g080090.2.1 | Tomato | nucleus | 32.61 | 24.01 |
| CDY66161 | Canola | nucleus | 32.83 | 23.94 |
| GSMUA_Achr1P03560_001 | Banana | nucleus | 29.59 | 23.87 |
| CDY26922 | Canola | nucleus | 32.61 | 23.74 |
| CDY41352 | Canola | nucleus | 21.38 | 23.52 |
| GSMUA_Achr4P29170_001 | Banana | nucleus | 29.16 | 23.48 |
| CDY00676 | Canola | nucleus | 21.38 | 23.13 |
| CDY34716 | Canola | nucleus | 14.69 | 23.13 |
| CDX73920 | Canola | nucleus | 21.38 | 22.15 |
| CDY41353 | Canola | nucleus | 20.95 | 22.0 |
| Zm00001d024543_P001 | Maize | nucleus | 31.1 | 21.69 |
| CDY00677 | Canola | nucleus | 20.73 | 21.57 |
| Zm00001d049540_P002 | Maize | cytosol | 30.45 | 21.33 |
| CDY00946 | Canola | nucleus | 20.73 | 21.29 |
| CDY08601 | Canola | nucleus, plastid | 20.73 | 21.1 |
| CDX73921 | Canola | cytosol, nucleus, plastid | 20.73 | 21.05 |
| OQU79937 | Sorghum | nucleus | 30.02 | 20.93 |
| CDX69911 | Canola | nucleus | 19.65 | 20.78 |
| CDX78356 | Canola | nucleus | 16.2 | 20.66 |
| CDY21575 | Canola | nucleus | 19.01 | 20.28 |
| TraesCS7A01G299600.3 | Wheat | nucleus | 30.67 | 20.26 |
| TraesCS7B01G187600.1 | Wheat | nucleus | 30.45 | 20.11 |
| CDY61762 | Canola | cytosol, nucleus, plastid | 22.46 | 20.04 |
| HORVU7Hr1G070780.5 | Barley | nucleus | 30.45 | 20.03 |
| CDY16943 | Canola | nucleus | 21.38 | 19.92 |
| TraesCS7D01G295100.1 | Wheat | nucleus | 29.81 | 19.86 |
| Os08t0157900-01 | Rice | nucleus, plasma membrane | 30.89 | 19.62 |
| CDX78734 | Canola | cytosol | 20.73 | 19.59 |
| CDY14157 | Canola | cytosol, nucleus, vacuole | 21.81 | 19.57 |
| CDX70227 | Canola | cytosol, nucleus, vacuole | 23.33 | 19.49 |
| CDY28745 | Canola | cytosol | 20.09 | 19.46 |
| CDY43143 | Canola | nucleus | 20.09 | 19.46 |
| CDX70745 | Canola | cytosol | 20.73 | 19.43 |
| CDY49932 | Canola | nucleus | 20.09 | 19.42 |
| CDY44853 | Canola | cytosol, nucleus, vacuole | 23.33 | 19.29 |
| CDY41354 | Canola | cytosol, nucleus, plastid | 22.03 | 18.99 |
| CDX91785 | Canola | nucleus | 22.03 | 18.92 |
| CDY11289 | Canola | cytosol, nucleus, vacuole | 22.68 | 18.55 |
| CDY58437 | Canola | cytosol, nucleus, plastid | 22.25 | 18.53 |
| CDY25752 | Canola | nucleus | 20.3 | 18.47 |
| CDX73305 | Canola | nucleus | 20.73 | 18.43 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane | 29.59 | 18.05 |
| CDX93723 | Canola | nucleus | 21.6 | 17.99 |
| CDY70628 | Canola | golgi | 15.33 | 17.93 |
| CDY28401 | Canola | cytosol, nucleus, plastid | 20.95 | 17.77 |
| CDY48632 | Canola | cytosol, nucleus, plastid | 21.6 | 17.76 |
| CDY60870 | Canola | nucleus | 22.03 | 17.68 |
| CDY16427 | Canola | nucleus | 22.03 | 17.14 |
| CDY12515 | Canola | plastid | 20.09 | 17.06 |
| CDX73304 | Canola | nucleus | 21.17 | 16.81 |
| CDY28397 | Canola | nucleus | 20.95 | 16.78 |
| CDY21216 | Canola | nucleus | 13.61 | 14.65 |
| CDX69392 | Canola | nucleus | 8.42 | 9.11 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078EZ95 | EnsemblPlants:CDY05939 | ProteinID:CDY05939 | ProteinID:CDY05939.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00121760001 | InterPro:IPR003441 |
| InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 |
| PANTHER:PTHR31989:SF54 | SUPFAM:SSF101941 | UniParc:UPI0004EF02A6 | : | : | : |
Description
BnaC08g21160D
Coordinates
chrLK031966:-:737985..740319
Molecular Weight (calculated)
51215.5 Da
IEP (calculated)
6.258
GRAVY (calculated)
-0.412
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMNQNIKV LTLDSLPVGL RFRPTDEELV SFYLQRKING HDDDVTAIRE IDICKWEPWD LPGFSVIKTN DSEWLFFCPL DRKYPNGSRQ NRATIAGYWK
101: ATGKDRKIKS GKSSIIGLKR TLVFHSGRAP KGTRTNWIMH EYRATEDDLS GTNPGQSPFV ICKLFKKPEL GLADEDSKLD EAADQDVLSP AGATSSPDET
201: RSHVSVVVKT EDVKRFDIAE SCLVVSGDSR IGACVEATTA QLGDIDDLSF PELESLNYKM FSPSHSQLQS ELGFSLNAFQ SGLSDFSGNH NNSSQVQTQC
301: GTNEVDTYIS DFVDSILDLP DEAVPEQEES APHQIAYAQH SMSNDVSRTG IIKLQARQQQ PSGCATSYMV HGSAAKRLRL QRNLEGIRAK SLELQTIKRE
401: VEDRDGETMK KGKQSQNRTG LLFKKFVSVR CSSGGLLRAA VVAILFLMSV CSLTADVRAS VMI
101: ATGKDRKIKS GKSSIIGLKR TLVFHSGRAP KGTRTNWIMH EYRATEDDLS GTNPGQSPFV ICKLFKKPEL GLADEDSKLD EAADQDVLSP AGATSSPDET
201: RSHVSVVVKT EDVKRFDIAE SCLVVSGDSR IGACVEATTA QLGDIDDLSF PELESLNYKM FSPSHSQLQS ELGFSLNAFQ SGLSDFSGNH NNSSQVQTQC
301: GTNEVDTYIS DFVDSILDLP DEAVPEQEES APHQIAYAQH SMSNDVSRTG IIKLQARQQQ PSGCATSYMV HGSAAKRLRL QRNLEGIRAK SLELQTIKRE
401: VEDRDGETMK KGKQSQNRTG LLFKKFVSVR CSSGGLLRAA VVAILFLMSV CSLTADVRAS VMI
001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS
Arabidopsis Description
NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.