Factsheet for PGSC0003DMT400069511

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400061606

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49530.1	PGSC0003DMT400061606	AT5G19570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g073050.2.1	Tomato	nucleus	84.92	89.92
PGSC0003DMT400001498	Potato	nucleus	54.6	53.92
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	8.89	48.28
GSMUA_Achr11P...	Banana	cytosol	13.49	44.97
Bra036520.1-P	Field mustard	nucleus	27.14	38.43
CDY19828	Canola	nucleus	27.14	38.43
AT5G24590.2	Thale cress	nucleus	27.3	38.14
CDX88115	Canola	cytosol	26.67	37.92
Bra009774.1-P	Field mustard	nucleus	26.98	37.36
PGSC0003DMT400079749	Potato	nucleus	14.6	36.8
CDX80455	Canola	nucleus	26.35	36.4
AT3G49530.1	Thale cress	nucleus	26.98	36.25
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.03	34.83
CDY00208	Canola	nucleus	23.81	34.72
Bra019599.1-P	Field mustard	nucleus	23.81	34.72
CDY05939	Canola	nucleus	25.08	34.13
CDY08139	Canola	nucleus	25.08	34.05
KRH53649	Soybean	nucleus	32.22	33.95
Bra017980.1-P	Field mustard	nucleus	24.76	33.69
KRH72602	Soybean	nucleus	31.27	33.45
VIT_16s0098g00760.t01	Wine grape	mitochondrion	34.13	33.39
KRH16970	Soybean	nucleus	30.95	33.05
KRH64275	Soybean	nucleus	31.43	32.84
PGSC0003DMT400060087	Potato	nucleus	16.51	26.6
PGSC0003DMT400045129	Potato	nucleus	13.97	26.43
PGSC0003DMT400079791	Potato	nucleus	16.35	25.75
PGSC0003DMT400015077	Potato	nucleus	16.35	25.25
Zm00001d049540_P002	Maize	cytosol	25.4	24.21
OQU79937	Sorghum	nucleus	25.4	24.1
GSMUA_Achr1P03560_001	Banana	nucleus	21.9	24.04
PGSC0003DMT400050482	Potato	nucleus	16.35	23.95
GSMUA_Achr4P29170_001	Banana	nucleus	21.43	23.48
Zm00001d024543_P001	Maize	nucleus	23.65	22.44
Os08t0157900-01	Rice	nucleus, plasma membrane	25.4	21.95
TraesCS7B01G187600.1	Wheat	nucleus	24.29	21.83
TraesCS7A01G299600.3	Wheat	nucleus	24.29	21.83
HORVU7Hr1G070780.5	Barley	nucleus	24.13	21.59
TraesCS7D01G295100.1	Wheat	nucleus	23.81	21.58
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	18.25	21.18
PGSC0003DMT400060090	Potato	nucleus	17.94	21.12
CDX87118	Canola	nucleus	27.14	20.55
PGSC0003DMT400055322	Potato	nucleus	18.25	20.46
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	24.13	20.03
PGSC0003DMT400073779	Potato	nucleus	15.4	17.9
PGSC0003DMT400043681	Potato	nucleus	15.24	16.38
PGSC0003DMT400079995	Potato	nucleus	15.87	11.1

Protein Annotations

EntrezGene:102605066	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1CKK6	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG402027023	PGSC:PGSC0003DMG402027023	EnsemblPlants:PGSC0003DMT400069511	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF14	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI000296B1BA	RefSeq:XP_006347316.1
SEG:seg	:	:	:	:	:

Description

Nam 1 [Source:PGSC_GENE;Acc:PGSC0003DMG402027023]

Coordinates

chr6:+:53631957..53635996

Molecular Weight (calculated)

69377.8 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.515

Length

630 amino acids

Sequence
(BLAST)

001: MTVPPVGNQV EVPPLNTLPI GYRFRPTDEE LINHYLCLKI NGCHNQVDVI REIDICKFEP WDLPDLSVVE SNDNEWLYFC PIDRKYQNGQ RLNRATERGY
101: WKATGKDRNI ATRKGAKIGM KKTLVYYIGR APEGKRTNWV IHEYRATDKS LDGSHPGQGA FVLCRLFKKN ELKQDENVES SHFDEVEQLV SSPAVGKSPT
201: NDGLSAVALS PIMESESNRS NPPKTSGGKT HDTRLSINSC GNSCTAGDAE DLMLDITSGQ SDLQIEELLG LFRDPSPEPI DWSPLHSQSQ VEFGSSISHG
301: TMTNEISSDQ KDVQCQNGIN DLNTSEFLNS ILVSSDELSY EDSEAELRSI WFASNSINTI TRAPVKDSGT CSVLKSQVTQ EPVRRDFFEP ELLLGNYGET
401: AVMREVNSVA TTVDEAFATP YVRNDHSMAN LDFLNNGYPG EVILSAGSGG MQVDSSLNFD ESNGYSNVGT DSAFGITRRT RQVQNQPDDS QLGSGMQGTT
501: VRRIRYQVKL QAGRVECRMP TDSDQGGADH EGLSTVSESE KFFNEEASTP SAAICSDETQ DTMCKEFKGD CQMAEDLSAN VKDTNGSKRA ALSSFSSSFY
601: ISKVLAVASL LMVFLGVLGC FKLRQSASKL

Best Arabidopsis Sequence Match ( AT3G49530.1 )
(BLAST)

001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS

Arabidopsis Description

NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.