Factsheet for PGSC0003DMT400043681

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056790.1.1	Tomato	nucleus	90.1	89.49
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	10.92	55.17
CDY46459	Canola	nucleus	26.11	50.33
VIT_18s0001g01820.t01	Wine grape	nucleus	48.81	50.0
KRG91745	Soybean	nucleus	42.15	44.99
KRH35027	Soybean	nucleus	42.32	44.29
PGSC0003DMT400079995	Potato	nucleus	66.72	43.4
AT1G34190.1	Thale cress	nucleus	40.1	42.19
CDX73305	Canola	nucleus	37.37	42.03
CDX91785	Canola	nucleus	37.54	40.82
Bra036744.1-P	Field mustard	nucleus	38.05	40.77
CDY28401	Canola	cytosol, nucleus, plastid	37.88	40.66
CDX93723	Canola	nucleus	38.57	40.65
Bra034436.1-P	Field mustard	cytosol, nucleus, plastid	37.71	40.48
Bra028039.1-P	Field mustard	nucleus	38.23	40.29
CDY48632	Canola	cytosol, nucleus, plastid	38.57	40.14
PGSC0003DMT400079749	Potato	nucleus	16.89	39.6
AT1G34180.2	Thale cress	nucleus	37.71	38.37
Bra034439.1-P	Field mustard	nucleus	36.52	37.02
CDY28397	Canola	nucleus	36.52	37.02
CDX73304	Canola	nucleus	36.69	36.88
CDY25752	Canola	nucleus	31.74	36.54
Bra012342.1-P	Field mustard	nucleus	31.74	36.54
GSMUA_Achr8P24280_001	Banana	nucleus	35.84	35.78
GSMUA_AchrUn_...	Banana	nucleus	33.96	34.97
CDY12515	Canola	plastid	32.08	34.5
AT1G32870.3	Thale cress	nucleus	31.23	32.45
PGSC0003DMT400045129	Potato	nucleus	17.75	31.23
PGSC0003DMT400079791	Potato	nucleus	18.77	27.5
PGSC0003DMT400060087	Potato	nucleus	17.75	26.6
Os09t0493700-01	Rice	nucleus	31.74	26.5
TraesCS5D01G279100.2	Wheat	nucleus, peroxisome, plastid	30.2	25.92
KXG35937	Sorghum	nucleus	31.23	25.81
TraesCS5A01G271500.2	Wheat	nucleus	31.06	24.93
HORVU5Hr1G074230.30	Barley	nucleus, plastid	31.57	24.41
PGSC0003DMT400060090	Potato	nucleus	21.84	23.93
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	21.16	22.84
PGSC0003DMT400055322	Potato	nucleus	21.33	22.24
PGSC0003DMT400015077	Potato	nucleus	14.68	21.08
PGSC0003DMT400073779	Potato	nucleus	18.09	19.56
PGSC0003DMT400050482	Potato	nucleus	13.99	19.07
TraesCS5B01G271800.1	Wheat	cytosol, golgi, peroxisome	17.92	17.89
PGSC0003DMT400069511	Potato	nucleus	16.38	15.24
PGSC0003DMT400001498	Potato	nucleus	16.55	15.2

Protein Annotations

EntrezGene:102591848	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1BF21	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400016962	PGSC:PGSC0003DMG400016962	EnsemblPlants:PGSC0003DMT400043681	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF27	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI00029611F7	RefSeq:XP_006360295.1
SEG:seg	:	:	:	:	:

Description

Nam 6 [Source:PGSC_GENE;Acc:PGSC0003DMG400016962]

Coordinates

chr12:+:54945427..54950568

Molecular Weight (calculated)

66249.4 Da

IEP (calculated)

4.639

GRAVY (calculated)

-0.514

Length

586 amino acids

Sequence
(BLAST)

001: MKMFELSDSD SLAGFASSRN VFPPGFRFHP TDEELVLYYL KKKICRKRIL LDAIADTDVY KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARANRGT
101: KRGHWKVTGK DRTITCNSRA VGVKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKKCQNA QDYYALYKVF KKSGSGPKNG EHYGAPFREE EWADDECPSA
201: KGFVHQDAPP VDGGLEELLN PVLMEPLSVD YDYALEQLVH EEDTRSTLLD HSAKEVNFPH HSAVIAPAKE SFDLTQSGTS QLQLHEVTEV TSAPVIYEQQ
301: PHVVEEDFRE DFLEMNDLLG PEPSTQNFDN LELYVKNFDE AGPSGQNFDM PAGNFEDLQF DFLDGLSEFD LFHDAPLLDD IRTTEVGQIT EPYMNNFVNG
401: SENPASTTYI STFQHEMMNN QLMYLNEGEQ TSNQLWTQDQ RFNIFNPSEA NQLVVPPATS GVVYDSILAN HPIGANQNQL PNQDDGTPSW LTSQLWAFVD
501: SIPTSPAIAA ESPVVNSAFK RMSSFSKMRI NSRNMNVVAA GNTATSRSSR HSKNGLFYFS FLGILCAILC VLVGTFVDIL RRLISS

Best Arabidopsis Sequence Match ( AT1G34190.1 )
(BLAST)

001: MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE LPGQSMLKTG DRQWFYFTPR SRKYPNAARS NRGTENGYWK
101: ATGKDRVIEY NSRSVGLKKT LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNPQEYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDVNAIAVA
201: VPEQPVVRYE DARRVDERRL FNPVILQLED IDELLNGIPN APGVPQRCIP QVNSEEELQS TLVNNSAREF LPNGQQYNRP SSFDSLETAE VTSAPLVFEK
301: EDFIEMDDLL LIPEFGASST EKAAQFSNHG EFDDFNEFDQ LFHDVSMSLD MEPIDQGTSA NLSSLSDSAN YTSDQKQQLL YQQFQDQTPE NQLNNIMDPS
401: TTLNQITSDI WFEDDQAILF DQQQSFSGAF ASPSSGVMPD STNPTMSVNA QGHEIQNGGG TTSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSFSR
501: MRFNGKANGT PVSTTIAKKG IRNRGFLLLS IVGALCAIFW VLVATVRVSG RSLLLKD

Arabidopsis Description

NAC017NAC017 [Source:UniProtKB/TrEMBL;Acc:A0A178WNW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.