Factsheet for Solyc12g056790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043681	Potato	nucleus	89.49	90.1
Solyc04g072220.2.1	Tomato	cytosol, nucleus, plastid	64.07	63.11
CDY46459	Canola	nucleus	25.93	50.33
VIT_18s0001g01820.t01	Wine grape	nucleus	48.14	49.65
Solyc03g078120.2.1	Tomato	cytosol	11.69	46.0
KRG91745	Soybean	nucleus	41.02	44.08
KRH35027	Soybean	nucleus	41.53	43.75
AT1G34190.1	Thale cress	nucleus	40.34	42.73
CDX73305	Canola	nucleus	37.46	42.42
Bra036744.1-P	Field mustard	nucleus	38.31	41.32
CDX91785	Canola	nucleus	37.63	41.19
CDY28401	Canola	cytosol, nucleus, plastid	37.97	41.03
Solyc03g098190.2.1	Tomato	nucleus	17.29	40.96
Bra034436.1-P	Field mustard	cytosol, nucleus, plastid	37.8	40.84
CDX93723	Canola	nucleus	38.47	40.83
Bra028039.1-P	Field mustard	nucleus	38.14	40.47
CDY48632	Canola	cytosol, nucleus, plastid	38.47	40.32
AT1G34180.2	Thale cress	nucleus	37.8	38.72
CDY28397	Canola	nucleus	37.12	37.89
Bra034439.1-P	Field mustard	nucleus	37.12	37.89
CDX73304	Canola	nucleus	37.29	37.74
CDY25752	Canola	nucleus	31.53	36.54
Bra012342.1-P	Field mustard	nucleus	31.53	36.54
GSMUA_Achr8P24280_001	Banana	nucleus	35.59	35.78
GSMUA_AchrUn_...	Banana	nucleus	33.56	34.8
CDY12515	Canola	plastid	31.53	34.13
AT1G32870.3	Thale cress	nucleus	30.85	32.27
Solyc08g077110.2.1	Tomato	nucleus	18.14	31.47
Solyc06g061080.2.1	Tomato	nucleus	16.95	29.67
Solyc05g055480.2.1	Tomato	nucleus	18.14	27.72
Os09t0493700-01	Rice	nucleus	30.68	25.78
Solyc11g008010.1.1	Tomato	endoplasmic reticulum, plasma membrane	20.0	25.38
TraesCS5D01G279100.2	Wheat	nucleus, peroxisome, plastid	29.32	25.33
KXG35937	Sorghum	nucleus	29.83	24.82
TraesCS5A01G271500.2	Wheat	nucleus	30.17	24.38
Solyc11g008000.1.1	Tomato	nucleus	21.69	24.24
HORVU5Hr1G074230.30	Barley	nucleus, plastid	30.68	23.88
Solyc05g055470.2.1	Tomato	nucleus	21.69	23.53
Solyc02g036430.1.1	Tomato	nucleus	21.02	21.95
Solyc06g074170.2.1	Tomato	nucleus	15.08	21.76
Solyc11g068750.1.1	Tomato	nucleus, plasma membrane	14.41	18.81
TraesCS5B01G271800.1	Wheat	cytosol, golgi, peroxisome	17.29	17.38
Solyc11g005920.1.1	Tomato	nucleus	18.98	16.3
Solyc06g073050.2.1	Tomato	nucleus	16.44	16.3
Solyc03g080090.2.1	Tomato	nucleus	17.12	16.06
Solyc02g081270.2.1	Tomato	nucleus	22.54	12.93

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:K4DG10	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF27	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc12g056790.1
EnsemblPlants:Solyc12g056790.1.1	TMHMM:TMhelix	UniParc:UPI000276A1D2	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:62869805..62872884

Molecular Weight (calculated)

66503.7 Da

IEP (calculated)

4.656

GRAVY (calculated)

-0.511

Length

590 amino acids

Sequence
(BLAST)

001: MKMFELSDSD SFAVFASSKN VFPPGFRFHP TDEELVLYYL KKKICGKRIL LDAIAETDVY KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY PNGARANRGT
101: KRGHWKVTGK DRIIMCNSRA VGLKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKKCQNA QDYYALYKVF KKSGSGPKNG EQYGAPFREE EWADDECPSA
201: KGFVHQDNST NHVIEAPSVD GGLEELLNPV LMEPLSVDYD YAVEQLVQEE DTRSTLLYHS AKEVNFPHRS AVIAPAKESF DLTQSGTSQR QLHEALEVTS
301: APVIYEQQPH VVEEDFLEMD DLLGPEPSTQ NFDNLGPCVQ NFDEAGQSGQ NFDMPAGNFE DLPFDYFDGL AEFDLYHDAS LLDDVRTTEV GQNTEPHMNN
401: LVNGSVNPAS TTYINTFQHE MMNNQPMYLN NSEQISNQLW VHDQRFNISY PSEANQLVAP PATSGVVYDS ILANHPMDAN QNQLPNQDEG TPSWLTSQLW
501: AFVDSIPTAP AIAAESPVVN SAFKRMSSFS KMRINARNMN VAAAGNTATS RSSRYSKNGL FYFSFVGILC AILCVLLGTF VDILRRPISS

Best Arabidopsis Sequence Match ( AT1G34190.1 )
(BLAST)

001: MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE LPGQSMLKTG DRQWFYFTPR SRKYPNAARS NRGTENGYWK
101: ATGKDRVIEY NSRSVGLKKT LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNPQEYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDVNAIAVA
201: VPEQPVVRYE DARRVDERRL FNPVILQLED IDELLNGIPN APGVPQRCIP QVNSEEELQS TLVNNSAREF LPNGQQYNRP SSFDSLETAE VTSAPLVFEK
301: EDFIEMDDLL LIPEFGASST EKAAQFSNHG EFDDFNEFDQ LFHDVSMSLD MEPIDQGTSA NLSSLSDSAN YTSDQKQQLL YQQFQDQTPE NQLNNIMDPS
401: TTLNQITSDI WFEDDQAILF DQQQSFSGAF ASPSSGVMPD STNPTMSVNA QGHEIQNGGG TTSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSFSR
501: MRFNGKANGT PVSTTIAKKG IRNRGFLLLS IVGALCAIFW VLVATVRVSG RSLLLKD

Arabidopsis Description

NAC017NAC017 [Source:UniProtKB/TrEMBL;Acc:A0A178WNW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.