Factsheet for Solyc05g055470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060090	Potato	nucleus	93.2	94.77
CDY70627	Canola	cytosol	20.77	68.48
KRH34662	Soybean	cytosol	11.4	68.13
Solyc11g008000.1.1	Tomato	nucleus	61.58	63.45
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	53.12	51.7
Solyc03g078120.2.1	Tomato	cytosol	13.6	49.33
Bra028790.1-P	Field mustard	cytosol, nucleus, plastid	42.1	45.44
AT3G10500.1	Thale cress	cytosol, nucleus, vacuole	45.04	44.63
AT5G04410.1	Thale cress	cytosol, nucleus, plastid	46.32	44.44
CDY58437	Canola	cytosol, nucleus, plastid	45.4	44.42
CDY14157	Canola	cytosol, nucleus, vacuole	42.1	44.38
CDY44853	Canola	cytosol, nucleus, vacuole	45.59	44.29
Bra009456.1-P	Field mustard	cytosol, nucleus, plastid	45.04	44.22
CDX70227	Canola	cytosol, nucleus, vacuole	45.04	44.22
CDY61762	Canola	cytosol, nucleus, plastid	41.73	43.74
CDY11289	Canola	cytosol, nucleus, vacuole	44.49	42.76
Bra005804.1-P	Field mustard	cytosol, nucleus, vacuole	44.49	42.68
CDY41354	Canola	cytosol, nucleus, plastid	40.44	40.97
Solyc03g098190.2.1	Tomato	nucleus	18.75	40.96
Bra034120.1-P	Field mustard	cytosol, nucleus, plastid	40.26	40.78
Solyc05g055480.2.1	Tomato	nucleus	28.31	39.9
KRG92121	Soybean	cytosol	39.71	35.76
Solyc11g008010.1.1	Tomato	endoplasmic reticulum, plasma membrane	28.86	33.76
Os02t0822400-01	Rice	nucleus	34.93	30.06
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	35.11	29.8
Zm00001d051879_P001	Maize	nucleus	35.48	29.38
EES06041	Sorghum	nucleus	34.93	29.14
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	34.38	29.13
TraesCS7D01G283800.1	Wheat	nucleus	34.38	28.95
TraesCS7B01G196900.1	Wheat	nucleus	34.19	28.93
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	34.19	28.88
OQU80699	Sorghum	plastid	35.48	28.81
HORVU7Hr1G060310.1	Barley	nucleus	34.01	28.64
Zm00001d031898_P001	Maize	plastid	34.74	28.29
Solyc08g077110.2.1	Tomato	nucleus	17.65	28.24
Solyc06g061080.2.1	Tomato	nucleus	17.46	28.19
Os08t0562200-02	Rice	nucleus	33.82	28.05
Zm00001d049913_P001	Maize	plastid	32.72	27.9
TraesCSU01G135000.1	Wheat	nucleus	34.38	26.38
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	28.68	26.0
GSMUA_Achr9P23580_001	Banana	plastid	28.31	25.97
GSMUA_AchrUn_...	Banana	nucleus	22.43	25.52
TraesCS6B01G451300.1	Wheat	nucleus	29.41	24.96
GSMUA_Achr2P04010_001	Banana	plastid	28.68	24.34
Solyc06g074170.2.1	Tomato	nucleus	17.46	23.23
Solyc04g072220.2.1	Tomato	cytosol, nucleus, plastid	24.63	22.37
Solyc12g056790.1.1	Tomato	nucleus	23.53	21.69
Solyc11g068750.1.1	Tomato	nucleus, plasma membrane	18.01	21.68
Solyc02g036430.1.1	Tomato	nucleus	22.24	21.42
Solyc06g073050.2.1	Tomato	nucleus	20.59	18.82
Solyc11g005920.1.1	Tomato	nucleus	22.79	18.05
Solyc03g080090.2.1	Tomato	nucleus	18.93	16.38
Solyc02g081270.2.1	Tomato	nucleus	22.61	11.95

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:K4C2M3	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF43	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc05g055470.2
EnsemblPlants:Solyc05g055470.2.1	TMHMM:TMhelix	UniParc:UPI0002767093	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:65103483..65108450

Molecular Weight (calculated)

60766.7 Da

IEP (calculated)

4.427

GRAVY (calculated)

-0.526

Length

544 amino acids

Sequence
(BLAST)

001: MESKGSAKWM APGFRFHPTD EELVRYYLRR KVIGKPLRFD AISEIDIYKV EPWDLPGMSR LKTRDLEWYF FSVLDRKHGN GAKTNRATER GYWKTTGKDR
101: AVHHKSKVVG MKKTLVFHSG RAPKGERTNW VMHEYKLIDE ELQKAGIVQD ALVLCRVFQK SGAGPKNGEK YGAPFVEEEW EDDELEIVPK EEAAEEVEFG
201: DDIYLDGHDL EEILGADSPV DGAPHPLNCY SEGNASNSGE TSNSFEEAQN WLQQPDEQES FDPAIQQINA DTNPVKHEFM SEPSNSMSTE DVDYLLDEPV
301: ITATDNLQFS DGAFLEASDL SRPIEVDTSG FDMLEDYLAF FDADDNFQSM GFNPPMMTGD DDHVSDLASV EEKNIAEVND QPIAPSEEPD DQKKNVASSS
401: KLEPSKFGSD YKYPFMKQTS CMLGGIPAPP AFASEFPSKN AALRMNSSSE ASSSIHVTGF IRITNMTVSS NGMDGLVGKH GNYNVILSLG LSQHGDSSAH
501: LESEASFLPG KTISTVSWCW FYYLFLWVLL LSTTFKIGTF IRAA

Best Arabidopsis Sequence Match ( AT5G04410.1 )
(BLAST)

001: MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFKFDA ISVTDIYKSE PWDLPDKSKL KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE
101: IRNGSRVVGM KKTLVYHKGR APRGERTNWV MHEYRLSDED LKKAGVPQEA YVLCRIFQKS GTGPKNGEQY GAPYLEEEWE EDGMTYVPAQ DAFSEGLALN
201: DDVYVDIDDI DEKPENLVVY DAVPILPNYC HGESSNNVES GNYSDSGNYI QPGNNVVDSG GYFEQPIETF EEDRKPIIRE GSIQPCSLFP EEQIGCGVQD
301: ENVVNLESSN NNVFVADTCY SDIPIDHNYL PDEPFMDPNN NLPLNDGLYL ETNDLSCAQQ DDFNFEDYLS FFDDEGLTFD DSLLMGPEDF LPNQEALDQK
401: PAPKELEKEV AGGKEAVEEK ESGEGSSSKQ DTDFKDFDSA PKYPFLKKTS HMLGAIPTPS SFASQFQTKD AMRLHAAQSS GSVHVTAGMM RISNMTLAAD
501: SGMGWSYDKN GNLNVVLSFG VVQQDDAMTA SGSKTGITAT RAMLVFMCLW VLLLSVSFKI VTMVSAR

Arabidopsis Description

NAC078NAC domain-containing protein 78 [Source:UniProtKB/Swiss-Prot;Acc:Q84K00]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.