Factsheet for Solyc04g072220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056790.1.1	Tomato	nucleus	63.11	64.07
PGSC0003DMT400079995	Potato	nucleus	94.32	62.71
CDY46459	Canola	nucleus	26.21	51.64
VIT_18s0001g01820.t01	Wine grape	nucleus	49.08	51.4
KRG91745	Soybean	nucleus	44.41	48.45
KRH35027	Soybean	nucleus	44.57	47.68
Solyc03g078120.2.1	Tomato	cytosol	11.35	45.33
AT1G34190.1	Thale cress	nucleus	41.07	44.17
Solyc03g098190.2.1	Tomato	nucleus	17.36	41.77
Bra028039.1-P	Field mustard	nucleus	38.73	41.73
CDX93723	Canola	nucleus	38.73	41.73
CDY48632	Canola	cytosol, nucleus, plastid	39.07	41.56
CDX91785	Canola	nucleus	37.23	41.37
CDX73305	Canola	nucleus	35.73	41.07
CDY28401	Canola	cytosol, nucleus, plastid	36.89	40.48
Bra036744.1-P	Field mustard	nucleus	36.89	40.4
Bra034436.1-P	Field mustard	cytosol, nucleus, plastid	36.73	40.29
AT1G34180.2	Thale cress	nucleus	37.73	39.24
CDX73304	Canola	nucleus	37.73	38.77
CDY28397	Canola	nucleus	37.23	38.58
Bra034439.1-P	Field mustard	nucleus	37.23	38.58
CDY25752	Canola	nucleus	32.05	37.72
Bra012342.1-P	Field mustard	nucleus	32.05	37.72
GSMUA_AchrUn_...	Banana	nucleus	34.89	36.73
GSMUA_Achr8P24280_001	Banana	nucleus	35.73	36.46
CDY12515	Canola	plastid	32.22	35.41
AT1G32870.3	Thale cress	nucleus	31.72	33.69
Solyc08g077110.2.1	Tomato	nucleus	17.36	30.59
Solyc06g061080.2.1	Tomato	nucleus	16.53	29.38
Solyc05g055480.2.1	Tomato	nucleus	18.36	28.5
Os09t0493700-01	Rice	nucleus	30.88	26.35
KXG35937	Sorghum	nucleus	30.55	25.81
Solyc11g008010.1.1	Tomato	endoplasmic reticulum, plasma membrane	19.87	25.59
TraesCS5D01G279100.2	Wheat	nucleus, peroxisome, plastid	28.71	25.18
Solyc05g055470.2.1	Tomato	nucleus	22.37	24.63
TraesCS5A01G271500.2	Wheat	nucleus	29.72	24.38
HORVU5Hr1G074230.30	Barley	nucleus, plastid	30.22	23.88
Solyc11g008000.1.1	Tomato	nucleus	20.87	23.67
Solyc06g074170.2.1	Tomato	nucleus	15.53	22.74
Solyc02g036430.1.1	Tomato	nucleus	20.7	21.95
Solyc11g068750.1.1	Tomato	nucleus, plasma membrane	15.03	19.91
TraesCS5B01G271800.1	Wheat	cytosol, golgi, peroxisome	16.86	17.21
Solyc11g005920.1.1	Tomato	nucleus	19.53	17.03
Solyc06g073050.2.1	Tomato	nucleus	16.03	16.13
Solyc03g080090.2.1	Tomato	nucleus	16.36	15.58
Solyc02g081270.2.1	Tomato	nucleus	22.04	12.83

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:K4BTK9	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF27	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc04g072220.2
EnsemblPlants:Solyc04g072220.2.1	TMHMM:TMhelix	UniParc:UPI0002766DD8	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:59216616..59220115

Molecular Weight (calculated)

67096.1 Da

IEP (calculated)

4.549

GRAVY (calculated)

-0.549

Length

599 amino acids

Sequence
(BLAST)

001: MKVLMDSVAA AASSSPCKEV KVSECFGENS VFPPGFRFHP TDEELVLYYL KRKICRRRIL LDAIGETDVY KWEPEDLPDL SKLKTGDRQW FFFSPRDRKY
101: PNGARSNRAS KHGYWKATGK DRIITCNSRA VGVKKTLVFY KGRAPVGERT DWVMHEYTMD EEELKRCQNV QDYYALYKVF KKSGPGPKNG EQYGAPFREE
201: DWLDDERLNA KVSVQPESPR DQENTAKNIN VVPDPDDAIE ELLKRPFTVD NNFALEQFVQ EEDTESTLLN QSSRDVNLYN HCAVAGPSCQ QYNARASFDL
301: TESGTSPLHL HEAPEVSSAP VNPEKPPYAV EEDFLEDFLE MDDLLVVDPN VQNFDHGTPN GQVFDKPAGN LETLQFDDFD GLSEFDLYHD APSLLDNVGT
401: PVVGQIAEPY MNNFVNGITY PDSTTYMSAF QNDMMNNQQM RLNHENQINN QFWMHDERFG VFNPIEGDQS VVDQSSSGVV NDNNMANYPM GANQNLAKKD
501: DGTQSWFSSN LWAFVDSIPT TPASAAESAL VVNRAFERMS SFSRMKLNVG NMNVAAGNAS ATSSSSGKGK YGLCCISLLG VLCAFLWVVI GTSAKIAGT

Best Arabidopsis Sequence Match ( AT1G34190.1 )
(BLAST)

001: MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE LPGQSMLKTG DRQWFYFTPR SRKYPNAARS NRGTENGYWK
101: ATGKDRVIEY NSRSVGLKKT LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNPQEYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDVNAIAVA
201: VPEQPVVRYE DARRVDERRL FNPVILQLED IDELLNGIPN APGVPQRCIP QVNSEEELQS TLVNNSAREF LPNGQQYNRP SSFDSLETAE VTSAPLVFEK
301: EDFIEMDDLL LIPEFGASST EKAAQFSNHG EFDDFNEFDQ LFHDVSMSLD MEPIDQGTSA NLSSLSDSAN YTSDQKQQLL YQQFQDQTPE NQLNNIMDPS
401: TTLNQITSDI WFEDDQAILF DQQQSFSGAF ASPSSGVMPD STNPTMSVNA QGHEIQNGGG TTSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSFSR
501: MRFNGKANGT PVSTTIAKKG IRNRGFLLLS IVGALCAIFW VLVATVRVSG RSLLLKD

Arabidopsis Description

NAC017NAC017 [Source:UniProtKB/TrEMBL;Acc:A0A178WNW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.