Factsheet for PGSC0003DMT400079995

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072220.2.1	Tomato	cytosol, nucleus, plastid	62.71	94.32
PGSC0003DMT400043681	Potato	nucleus	43.4	66.72
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	7.21	56.03
CDY46459	Canola	nucleus	18.09	53.62
VIT_18s0001g01820.t01	Wine grape	nucleus	32.63	51.4
KRG91745	Soybean	nucleus	29.74	48.82
KRH35027	Soybean	nucleus	29.74	47.86
AT1G34190.1	Thale cress	nucleus	28.08	45.42
PGSC0003DMT400079749	Potato	nucleus	11.88	42.8
CDY48632	Canola	cytosol, nucleus, plastid	26.64	42.63
CDX93723	Canola	nucleus	26.3	42.63
CDX91785	Canola	nucleus	25.42	42.49
Bra028039.1-P	Field mustard	nucleus	25.97	42.09
Bra036744.1-P	Field mustard	nucleus	25.53	42.05
CDX73305	Canola	nucleus	24.31	42.03
CDY28401	Canola	cytosol, nucleus, plastid	25.19	41.58
Bra034436.1-P	Field mustard	cytosol, nucleus, plastid	25.08	41.39
AT1G34180.2	Thale cress	nucleus	25.75	40.28
CDX73304	Canola	nucleus	25.42	39.28
Bra034439.1-P	Field mustard	nucleus	24.97	38.93
CDY28397	Canola	nucleus	24.97	38.93
GSMUA_AchrUn_...	Banana	nucleus	24.08	38.14
Bra012342.1-P	Field mustard	nucleus	21.31	37.72
CDY25752	Canola	nucleus	21.31	37.72
GSMUA_Achr8P24280_001	Banana	nucleus	24.42	37.48
CDY12515	Canola	plastid	21.31	35.23
AT1G32870.3	Thale cress	nucleus	21.53	34.4
PGSC0003DMT400045129	Potato	nucleus	11.54	31.23
PGSC0003DMT400079791	Potato	nucleus	12.65	28.5
PGSC0003DMT400060087	Potato	nucleus	12.32	28.39
Os09t0493700-01	Rice	nucleus	21.53	27.64
KXG35937	Sorghum	nucleus	21.09	26.8
TraesCS5D01G279100.2	Wheat	nucleus, peroxisome, plastid	20.2	26.65
TraesCS5A01G271500.2	Wheat	nucleus	20.87	25.75
HORVU5Hr1G074230.30	Barley	nucleus, plastid	21.09	25.07
PGSC0003DMT400060090	Potato	nucleus	14.76	24.86
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	14.43	23.94
PGSC0003DMT400015077	Potato	nucleus	10.54	23.28
PGSC0003DMT400055322	Potato	nucleus	13.98	22.42
PGSC0003DMT400073779	Potato	nucleus	13.1	21.77
PGSC0003DMT400050482	Potato	nucleus	10.21	21.4
TraesCS5B01G271800.1	Wheat	cytosol, golgi, peroxisome	12.1	18.57
PGSC0003DMT400069511	Potato	nucleus	11.1	15.87
PGSC0003DMT400001498	Potato	nucleus	11.1	15.67

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1D2T8	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400031149	PGSC:PGSC0003DMG400031149	EnsemblPlants:PGSC0003DMT400079995	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF27	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI000295FFF5	SEG:seg	:

Description

Nam 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400031149]

Coordinates

chr4:+:61686710..61691346

Molecular Weight (calculated)

101755.0 Da

IEP (calculated)

4.590

GRAVY (calculated)

-0.615

Length

901 amino acids

Sequence
(BLAST)

001: MKLLMDSSAP SSSSPCKEMK VSECFGENSV FPPGFRFHPT DEELVLYYLK RKICRRRILL DAIAETDVYK WEPEDLPDLS KLKTGDRQWF FFSPRDRKYP
101: NGARSNRASK HGYWKATGKD RIITCNSRAV GVKKTLVFYK GRAPVGERTD WVMHEYTMDE EELKRCQNAQ DYYALYKVFK KSGPGPKNGE QYGAPFREED
201: WVDDECLNAK VSVQPEIPRH QESSAKNINV VPAPDDAIEE LLKRPFTVDN NFALEQFVQE EDTESTLLNQ SSREVDLYNH CAVAGPSCQQ YDARASFDLT
301: ESGTSPLHLY EAPEVSSAPV NPVNPPYVVE EDFLEDFLEM DDLLVAIQDL ESVGAKWDSN PQPQPSKVAL LPWHHKPNLF YLSKLKTGDR QWFFFSPRDR
401: KYPNGARSNR ASKHGYWKAT GKDRIITCNS RAVGVKKTLV FYKGRAPVGE RTDWVMHEYT MDEEELKRCQ NAQDYYALYK VFKKSGPGPK NGEQYGAPFR
501: EEDWVDDECL NAKVSVQPEI PRHQESSAKN INVVPAPDDA IEELLKRPFT VDNNFALEQF VQEEDTESTL LNQSSREVDL YNHCAVAGPS CQQYDARASF
601: DLTESGTSPL HLYEAPEVSS APVNPVNPPY VVEEDFLEDF LEMDDLLVAE PNVQNFDHET PNGQVFDKPA GNLETLQFDD FDGLSEFDLY HDAPSRLDNV
701: GTPTVGQIAE PYMNNFVNGI TYPDSTTYMS TFQNDMMNNQ QMCLNHENQI NNQFWMHDER FGSFNPIEED QSVVDQASSG VVNDNNMANY PMGANQNLAK
801: KDDGTQSWFS SNLWAFVDSI PTTPASAAES ALVVNRAFER MSSFSRMKLN VGNMNVAAGN TSATSSSSGK AKYGLCCISL LGVLCAFLWV LIGTSAKIVG
901: T

Best Arabidopsis Sequence Match ( AT1G34190.1 )
(BLAST)

001: MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE LPGQSMLKTG DRQWFYFTPR SRKYPNAARS NRGTENGYWK
101: ATGKDRVIEY NSRSVGLKKT LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNPQEYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDVNAIAVA
201: VPEQPVVRYE DARRVDERRL FNPVILQLED IDELLNGIPN APGVPQRCIP QVNSEEELQS TLVNNSAREF LPNGQQYNRP SSFDSLETAE VTSAPLVFEK
301: EDFIEMDDLL LIPEFGASST EKAAQFSNHG EFDDFNEFDQ LFHDVSMSLD MEPIDQGTSA NLSSLSDSAN YTSDQKQQLL YQQFQDQTPE NQLNNIMDPS
401: TTLNQITSDI WFEDDQAILF DQQQSFSGAF ASPSSGVMPD STNPTMSVNA QGHEIQNGGG TTSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSFSR
501: MRFNGKANGT PVSTTIAKKG IRNRGFLLLS IVGALCAIFW VLVATVRVSG RSLLLKD

Arabidopsis Description

NAC017NAC017 [Source:UniProtKB/TrEMBL;Acc:A0A178WNW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.