Factsheet for PGSC0003DMT400045129

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077110.2.1	Tomato	nucleus	95.5	93.53
KRH58218	Soybean	nucleus	61.56	59.42
KRH04320	Soybean	nucleus	60.66	59.06
CDX90431	Canola	nucleus	50.45	58.74
Bra012626.1-P	Field mustard	nucleus	50.15	58.39
CDY01508	Canola	nucleus	49.85	58.04
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	20.12	57.76
VIT_02s0012g01040.t01	Wine grape	nucleus	62.76	57.26
AT4G17980.2	Thale cress	nucleus	48.65	55.48
Bra013272.1-P	Field mustard	nucleus	48.65	55.48
CDX78816	Canola	nucleus	48.65	55.48
CDY44498	Canola	nucleus	48.35	55.14
CDX77674	Canola	nucleus	46.55	54.58
CDY63046	Canola	nucleus	46.85	53.79
Bra025012.1-P	Field mustard	nucleus	46.55	53.45
Bra022046.1-P	Field mustard	nucleus	46.55	52.72
CDY59580	Canola	nucleus	46.55	52.72
CDX87703	Canola	nucleus	46.25	52.38
AT5G46590.1	Thale cress	nucleus	44.74	51.03
GSMUA_Achr3P18070_001	Banana	nucleus	37.84	50.81
CDX84070	Canola	nucleus	41.14	48.41
AT1G32510.1	Thale cress	nucleus	41.14	48.41
CDY67205	Canola	nucleus	41.14	47.9
CDY66060	Canola	nucleus	41.14	47.9
Bra035488.1-P	Field mustard	nucleus	40.54	47.2
PGSC0003DMT400079749	Potato	nucleus	33.03	44.0
Zm00001d047050_P001	Maize	cytosol, nucleus, plastid	38.74	41.48
Zm00001d030023_P001	Maize	cytosol, nucleus, plastid	40.84	39.65
TraesCS1A01G190100.1	Wheat	nucleus	39.64	39.4
EER94455	Sorghum	nucleus	41.74	39.38
GSMUA_Achr5P03360_001	Banana	nucleus	41.14	38.27
GSMUA_Achr11P...	Banana	nucleus	44.74	37.63
HORVU1Hr1G049840.3	Barley	cytosol	40.24	37.53
GSMUA_Achr5P18140_001	Banana	nucleus	42.04	37.43
TraesCS1B01G192200.1	Wheat	cytosol, nucleus, plastid	39.94	36.44
TraesCS1D01G194200.2	Wheat	cytosol, nucleus, plastid	39.34	35.69
PGSC0003DMT400060087	Potato	nucleus	29.43	25.06
PGSC0003DMT400079791	Potato	nucleus	29.73	24.75
PGSC0003DMT400055322	Potato	nucleus	40.24	23.84
TraesCSU01G163300.1	Wheat	cytoskeleton, nucleus, peroxisome	27.03	22.0
TraesCSU01G168500.1	Wheat	cytoskeleton, nucleus, peroxisome	27.03	22.0
TraesCSU01G215800.1	Wheat	cytoskeleton, nucleus, peroxisome	27.03	22.0
PGSC0003DMT400015077	Potato	nucleus	26.43	21.57
PGSC0003DMT400050482	Potato	nucleus	26.13	20.23
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	30.03	18.42
PGSC0003DMT400043681	Potato	nucleus	31.23	17.75
PGSC0003DMT400060090	Potato	nucleus	28.23	17.57
PGSC0003DMT400073779	Potato	nucleus	27.33	16.79
PGSC0003DMT400001498	Potato	nucleus	27.33	14.26
PGSC0003DMT400069511	Potato	nucleus	26.43	13.97
PGSC0003DMT400079995	Potato	nucleus	31.23	11.54

Protein Annotations

EntrezGene:102591685	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	UniProt:M1BH48	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
EnsemblPlantsGene:PGSC0003DMG400017505	PGSC:PGSC0003DMG400017505	EnsemblPlants:PGSC0003DMT400045129	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF51
SUPFAM:SSF101941	UniParc:UPI000295B3A7	RefSeq:XP_006352840.1	:	:	:

Description

Nam 11 [Source:PGSC_GENE;Acc:PGSC0003DMG400017505]

Coordinates

chr8:-:49864654..49866761

Molecular Weight (calculated)

37396.5 Da

IEP (calculated)

5.444

GRAVY (calculated)

-0.600

Length

333 amino acids

Sequence
(BLAST)

001: MAGTSLPPGF RFHPTDEELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR DFEWFFFCAR DKKYPNGSRT NRATKSGYWK ATGKDRKVVC
101: HPAVVGYRKT LVFYRGRAPL GDRTDWVMHE YRLCDDVTQG TPSFQGPFAL CRVIKRNDVS LKTKDVGGVK QIGCTTSGAF TSVNALSDET PTQSAYMSND
201: SNYSTPITSP YQTTQFGDYE SAIGANSANL WMSSAMILDS SKECPQGQNA SNYCPQYDFP SMTPCQPSDQ SEFTSNSTFP NFRGEVELSG DLSSFGCMSP
301: YSIHGSYVGF YGNEDMTYEG FNQNNSTKNP NLF

Best Arabidopsis Sequence Match ( AT4G17980.2 )
(BLAST)

001: MGSSCLPPGF RFHPTDEELI GYYLSRKIEG LEIELEVIPV IDLYKFDPWE LPGKSFLPNR DLEWFFFCPR DKKYANGSRT NRATKAGYWK ATGKDRKITC
101: KSSHVIAGYR KTLVFYEGRA PLGDRTNWFM HEYRLCDIDD HSQKSPNFKG AFALCRVVKK NELKKNSKSL KNKNEQDIGS CYSSLATSPC RDEASQIQSF
201: KPSSTTNDSS SIWISPDFIL DSSKDYPQIK EVASECFPNY HFPVTTANHH VEFPVSSCYF NVDQDIDQSM QTGYWTNYEN DQTGSFDYSN LF

Arabidopsis Description

anac071NAC domain containing protein 71 [Source:TAIR;Acc:AT4G17980]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.