Factsheet for PGSC0003DMT400079791

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008010.1.1	Tomato	endoplasmic reticulum, plasma membrane	88.75	76.34
PGSC0003DMT400060087	Potato	nucleus	73.75	75.45
CDY41351	Canola	plastid	25.75	61.68
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	16.75	57.76
KRG92124	Soybean	nucleus	52.75	45.38
KRH34660	Soybean	plastid	52.0	44.73
CDY41352	Canola	nucleus	45.5	43.23
Bra034118.1-P	Field mustard	nucleus	45.25	42.99
CDY41353	Canola	nucleus	46.0	41.72
Bra034119.1-P	Field mustard	nucleus	45.5	41.36
Bra001366.1-P	Field mustard	nucleus	43.5	41.33
CDY00676	Canola	nucleus	43.75	40.89
AT3G10490.2	Thale cress	nucleus	46.0	40.8
Bra029844.1-P	Field mustard	nucleus, plastid	45.75	40.22
Bra001365.1-P	Field mustard	nucleus	43.25	40.14
CDY00946	Canola	nucleus	45.25	40.13
CDY08601	Canola	nucleus, plastid	45.5	40.0
VIT_13s0019g05230.t01	Wine grape	nucleus	43.0	39.81
CDX73920	Canola	nucleus	43.25	38.7
CDY00677	Canola	nucleus	42.75	38.43
PGSC0003DMT400079749	Potato	nucleus	23.75	38.0
CDY70628	Canola	golgi	37.25	37.63
CDX73921	Canola	cytosol, nucleus, plastid	42.75	37.5
AT3G10480.3	Thale cress	plastid	46.0	34.98
PGSC0003DMT400060090	Potato	nucleus	41.0	30.65
PGSC0003DMT400045129	Potato	nucleus	24.75	29.73
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	40.0	29.47
PGSC0003DMT400015077	Potato	nucleus	24.5	24.02
GSMUA_AchrUn_...	Banana	nucleus	27.75	23.22
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	36.5	22.67
Os02t0822400-01	Rice	nucleus	35.5	22.47
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	36.0	22.43
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	35.75	22.31
GSMUA_Achr9P23580_001	Banana	plastid	31.75	21.42
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	32.0	21.33
Zm00001d049913_P001	Maize	plastid	34.0	21.32
PGSC0003DMT400055322	Potato	nucleus	29.75	21.17
TraesCS7B01G196900.1	Wheat	nucleus	34.0	21.15
TraesCS7D01G283800.1	Wheat	nucleus	34.0	21.05
HORVU7Hr1G060310.1	Barley	nucleus	34.0	21.05
Os08t0562200-02	Rice	nucleus	34.25	20.88
EES06041	Sorghum	nucleus	34.0	20.86
Zm00001d051879_P001	Maize	nucleus	33.75	20.55
PGSC0003DMT400073779	Potato	nucleus	27.75	20.48
PGSC0003DMT400050482	Potato	nucleus	22.0	20.47
OQU80699	Sorghum	plastid	34.25	20.45
Zm00001d031898_P001	Maize	plastid	34.0	20.36
GSMUA_Achr2P04010_001	Banana	plastid	30.75	19.19
TraesCSU01G135000.1	Wheat	nucleus	33.75	19.04
PGSC0003DMT400043681	Potato	nucleus	27.5	18.77
TraesCS6B01G451300.1	Wheat	nucleus	30.0	18.72
PGSC0003DMT400069511	Potato	nucleus	25.75	16.35
PGSC0003DMT400001498	Potato	nucleus	25.75	16.14
PGSC0003DMT400079995	Potato	nucleus	28.5	12.65

Protein Annotations

EntrezGene:107063498	MapMan:15.5.17	Gene3D:3.30.310.150	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1D2G1	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400031072	PGSC:PGSC0003DMG400031072	EnsemblPlants:PGSC0003DMT400079791	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF43	SUPFAM:SSF101941	UniParc:UPI00029568FA	RefSeq:XP_015170903.1	SEG:seg	:

Description

Nam 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400031072]

Coordinates

chr11:+:3991944..3997424

Molecular Weight (calculated)

45047.8 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.735

Length

400 amino acids

Sequence
(BLAST)

001: MEQEGALVLA PAPVGPVTPR RAVAAPATSL APGFRFHPTD EELVRYYLRR KACGKPFRIE AVSEIDVYKS EPWDLRDYSS LKTRDLEWYF FSPVDRKYGN
101: GSRLNRATGQ GYWKATGKDR PVRHKSETIG MKKTLVFHNG RAPDGKRTNW VMHEYRLADE ELEAAGVVQD AFVLCRIFQK SGLGPPNGDR YAPFIEEEWN
201: DDTTLMVPGG ETEDDVANGD EARVEGNEFD QDVHGKAPCQ SENLLEPRPL SFVCKRERSE DLELLSLAQS KRSKHDDPSS SHANGSEDST TSQQDPPTKT
301: MTTNYSPTLL TFPLLDPLEP KEAQPSNSLN FDSSNLEKSV PPGYLKFISN LENEILNVSM ERETAKIEVM RAQAMINILQ SRLDLLNKEN EDLRRLVRGG

Best Arabidopsis Sequence Match ( AT3G10480.2 )
(BLAST)

001: MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG EVDIYKHEPW DLAVFSKLKT RDQEWYFFSA LDKKYGNGAR
101: MNRATNKGYW KATGKDREIR RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE TNGSLLDAYV LCRVFHKNNI GPPSGNRYAP FMEEEWADGG
201: GALIPGIDVR VRVEALPQAN GNNQMDQEMH SASKDLININ ELPRDATPMD IEPNQQNHHE SAFKPQESNN HSGYEEDEDT LKREHAEEDE RPPSLCILNK
301: EAPLPLLQYK RRRQNESNNN SSRNTQDHCS STITTVDNTT TLISSSAAAA TNTAISALLE FSLMGISDKK ENQQKEETSP PSPIASPEEK VNDLQKEVHQ
401: MSVERETFKL EMMSAEAMIS ILQSRIDALR QENEELKKKN ASGQAS

Arabidopsis Description

ANAC050NAC domain containing protein 50 [Source:UniProtKB/TrEMBL;Acc:F4J3S6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.