CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34660	Soybean	plastid	94.62	94.62
CDY41351	Canola	plastid	24.73	68.86
KRH34662	Soybean	cytosol	12.69	64.84
PGSC0003DMT400079791	Potato	nucleus	45.38	52.75
CDY41352	Canola	nucleus	47.31	52.26
Bra034118.1-P	Field mustard	nucleus	47.1	52.02
PGSC0003DMT400060087	Potato	nucleus	43.23	51.41
Solyc05g055480.2.1	Tomato	nucleus	42.37	51.04
CDY41353	Canola	nucleus	47.53	50.11
Bra034119.1-P	Field mustard	nucleus	47.1	49.77
AT3G10490.2	Thale cress	nucleus	47.96	49.45
CDY00676	Canola	nucleus	45.38	49.3
Bra029844.1-P	Field mustard	nucleus, plastid	47.96	49.01
CDY08601	Canola	nucleus, plastid	47.74	48.79
CDY00946	Canola	nucleus	47.31	48.78
Bra001365.1-P	Field mustard	nucleus	45.16	48.72
Bra001366.1-P	Field mustard	nucleus	43.44	47.98
CDY00677	Canola	nucleus	43.66	45.62
CDY70628	Canola	golgi	38.71	45.45
CDX73921	Canola	cytosol, nucleus, plastid	44.52	45.39
CDX73920	Canola	nucleus	43.44	45.19
AT3G10480.3	Thale cress	plastid	48.6	42.97
Solyc11g008010.1.1	Tomato	endoplasmic reticulum, plasma membrane	42.58	42.58
VIT_13s0019g05230.t01	Wine grape	nucleus	36.99	39.81
KRH09473	Soybean	nucleus	21.72	38.26
KRH38928	Soybean	nucleus	21.72	38.11
KRH43549	Soybean	cytosol	23.23	33.44
KRH13792	Soybean	nucleus	22.37	29.97
KRH59567	Soybean	cytosol, golgi, nucleus	20.43	29.97
KRH43662	Soybean	nucleus	22.15	29.6
KRH58218	Soybean	nucleus	21.29	28.7
KRH04320	Soybean	nucleus	21.08	28.66
KRG91745	Soybean	nucleus	26.45	22.4
KRH22653	Soybean	nucleus	17.42	21.83
GSMUA_AchrUn_...	Banana	nucleus	22.37	21.76
KRH64046	Soybean	nucleus	22.37	21.53
Os02t0822400-01	Rice	nucleus	29.25	21.52
KRH35027	Soybean	nucleus	25.81	21.43
KRG92121	Soybean	cytosol	27.53	21.19
HORVU7Hr1G060310.1	Barley	nucleus	29.03	20.9
TraesCS7B01G196900.1	Wheat	nucleus	28.82	20.84
Os08t0562200-02	Rice	nucleus	29.25	20.73
EES06041	Sorghum	nucleus	29.03	20.71
Zm00001d049913_P001	Maize	plastid	28.39	20.69
KRH53893	Soybean	nucleus	22.37	20.68
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	28.39	20.59
TraesCS7D01G283800.1	Wheat	nucleus	28.6	20.59
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	28.39	20.56
Zm00001d031898_P001	Maize	plastid	29.25	20.36
Zm00001d051879_P001	Maize	nucleus	28.6	20.24
GSMUA_Achr9P23580_001	Banana	plastid	25.81	20.24
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	27.96	20.19
OQU80699	Sorghum	plastid	29.03	20.15
KRH16970	Soybean	nucleus	24.09	18.98
KRH72602	Soybean	nucleus	23.66	18.68
TraesCSU01G135000.1	Wheat	nucleus	28.39	18.62
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	23.87	18.5
KRH17271	Soybean	cytosol, nucleus, plasma membrane	25.38	18.32
GSMUA_Achr2P04010_001	Banana	plastid	25.16	18.25
KRH72917	Soybean	cytosol, nucleus, plasma membrane	24.95	18.04
KRH53649	Soybean	nucleus	23.01	17.89
KRH30885	Soybean	cytosol, nucleus, vacuole	25.81	17.86
KRH64275	Soybean	nucleus	23.01	17.74
KRG98003	Soybean	cytosol, nucleus, plasma membrane	25.59	17.55
KRH26664	Soybean	nucleus	17.42	16.43
TraesCS6B01G451300.1	Wheat	nucleus	22.58	16.38

Protein Annotations

EntrezGene:100808783	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:ACUP02012732	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G192500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1NHS3	InterPro:IPR003441	InterPro:IPR036093
EnsemblPlants:KRG92124	ProteinID:KRG92124	ProteinID:KRG92124.1	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF29	SUPFAM:SSF101941	UniParc:UPI000233DB33	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:43134735..43141822

Molecular Weight (calculated)

52102.2 Da

IEP (calculated)

7.262

GRAVY (calculated)

-0.749

Length

465 amino acids

Sequence
(BLAST)

001: MGRETMCLST PPPTTATTTV NPVPPPPPAP PTSLAPGFRF HPTDEELVIY YLKRKVSGKS FRFDAISEVD IYRSEPWDLA DKSRLKTRDQ EWYFFSALDK
101: KYGNGGRMNR ATSKGYWKAT GNDRPVRHDQ RTVGLKKTLV FHSGRAPDGK RTNWVMHEYR LVEEELERAG TGSCQPQDAY VLCRVFHKNN IGPPNGQRYA
201: PFIEEEWDDA SGMVPGADHV DNRSFAHQPR VEGNGGVLCA EGRNGVVQDT QSFNKAPFDV NKLPIETQNL LAVCKRESMA EYPSPEKDDN NCKHMDDYPS
301: PQTDNPKPFS QIYKRRRHNL NSNNSNVSGD SVRTSQDPCS STITTAATAL PTATVAGTAT NTAPKKHFLS ALVEFSLLES LESKDNLASI KAPDFDTENL
401: ESSMPPSCAK FIKQMQSEMQ KLSVEKETIR FEMMSAQAMI NILQSRIDVL SKENEDLKRM VAQNP

Best Arabidopsis Sequence Match ( AT3G10490.2 )
(BLAST)

001: MGRESVAVVT APPSATAPGT ASVATSLAPG FRFHPTDEEL VSYYLKRKVL GQPVRFDAIG EVDIYKHEPW DLAVFSRLKT RDQEWYFYSA LDKKYGNGAR
101: MNRATNRGYW KATGKDREIR RDILLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE KNGNLVQDAY VLCRVFHKNN IGPPSGNRYA PFMEEEWADD
201: EGALIPGIDV KLRLEPPPVA NGNDQMDQEI QSASKSLINI NEPPRETAPL DIESDQQNHH ENDLKPEEHN NNNNYDENEE TLKREQMEEE ERPPRPVCVL
301: NKEAPLPLLQ YKRRRQSESN NNSSRNTQDH CSSTTTTVDN TTTLISSSAA ATNTAISALL EFSLMGISDK KEKPQQPLRP HKEPLPPQTP LASPEEKVND
401: LQKEIHQMSV ERETFKLEMM SAEAMISILQ SRIDALRQEN EELKKNNANG Q

Arabidopsis Description

ANAC052NAC052 [Source:UniProtKB/TrEMBL;Acc:A0A178VCW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.