CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01172
KRH04424
KRH11775
KRH18475
KRH24688
KRH28353
KRH29690
KRH36781
KRH40099
KRH43001
KRH58109
KRH59117
KRH77129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54330.1	KRH24688	AT1G51190.1	21245844
AT1G54330.1	KRH29690	AT1G51190.1	21245844
AT1G54330.1	KRH11775	AT2G34710.1	21245844
AT1G54330.1	KRH36781	AT2G34710.1	21245844
AT1G54330.1	KRH43001	AT2G34710.1	21245844
AT1G54330.1	KRH59117	AT2G34710.1	21245844
AT1G54330.1	KRH04424	AT4G37650.1	21245844
AT1G54330.1	KRH28353	AT4G37650.1	21245844
AT1G54330.1	KRH58109	AT4G37650.1	21245844
AT1G54330.1	KRH77129	AT4G37650.1	21245844
AT1G54330.1	KRH01172	AT5G39760.1	21245844
AT1G54330.1	KRH18475	AT5G39760.1	21245844
AT1G54330.1	KRH40099	AT5G39760.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43662	Soybean	nucleus	95.68	95.4
CDY71253	Canola	cytosol	34.29	66.85
KRH34662	Soybean	cytosol	16.71	63.74
VIT_19s0085g00950.t01	Wine grape	nucleus	48.13	59.43
AT1G54330.1	Thale cress	nucleus	46.4	53.49
CDX67739	Canola	nucleus	46.69	52.09
Bra003335.1-P	Field mustard	nucleus	44.67	51.49
Bra030807.1-P	Field mustard	nucleus	45.24	50.81
CDY42413	Canola	nucleus	45.24	50.81
CDY10502	Canola	nucleus	44.67	50.49
KRH09473	Soybean	nucleus	36.6	48.11
KRH38928	Soybean	nucleus	36.6	47.92
KRH04320	Soybean	nucleus	31.99	32.46
KRH58218	Soybean	nucleus	31.7	31.88
KRH72917	Soybean	cytosol, nucleus, plasma membrane	49.28	26.59
KRH43549	Soybean	cytosol	24.5	26.32
KRH17271	Soybean	cytosol, nucleus, plasma membrane	48.13	25.93
KRH22653	Soybean	nucleus	25.94	24.26
KRG98003	Soybean	cytosol, nucleus, plasma membrane	46.97	24.04
KRH30885	Soybean	cytosol, nucleus, vacuole	46.4	23.96
KRH59567	Soybean	cytosol, golgi, nucleus	21.33	23.34
KRH34660	Soybean	plastid	30.26	22.58
KRG92124	Soybean	nucleus	29.97	22.37
KRG91745	Soybean	nucleus	31.41	19.85
KRH35027	Soybean	nucleus	31.12	19.29
KRH64046	Soybean	nucleus	25.94	18.63
KRH26664	Soybean	nucleus	26.22	18.46
KRH16970	Soybean	nucleus	30.84	18.14
KRH72602	Soybean	nucleus	30.55	18.0
KRH53893	Soybean	nucleus	25.65	17.69
KRG92121	Soybean	cytosol	30.26	17.38
KRH64275	Soybean	nucleus	29.68	17.08
KRH53649	Soybean	nucleus	29.39	17.06

Protein Annotations

EntrezGene:100808325	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:ACUP02009788	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G264100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:K7ME20
EnsemblPlants:KRH13792	ProteinID:KRH13792	ProteinID:KRH13792.1	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF9	SUPFAM:SSF101941	UniParc:UPI000233BE78	:

Description

hypothetical protein

Coordinates

chr15:-:49820324..49824883

Molecular Weight (calculated)

39767.9 Da

IEP (calculated)

4.767

GRAVY (calculated)

-0.673

Length

347 amino acids

Sequence
(BLAST)

001: MAPMSLPPGF RFHPTDEELV AYYLERKITG RSIELDIIAE VDLYKCEPWD LPDKSFLPSK DMEWYFYSPR DRKYPNGSRT NRATQAGYWK ATGKDRPVHS
101: QKKQVGMKKT LVYYRGRAPH GIRTNWVMHE YRLIESVPGA TLSSLKDSYS LCRIFKKTIQ IPAKTNNKEE EQVENAKKES MWISEEQMLG EDSSGTEISR
201: EMEAVDEKIL NHEHPKFPCD ASSSDLTQGT CTPTDTGIAE DFQPQFACDE ANSAANSYTM GIGYPTNLFQ DVQIPSYAGM HYQLPYTPLV MEDFPQINLP
301: ETKITKPEVT DDCMLYDRYR DCMNGTLEEI ISLCCTQDNS VPFPMLE

Best Arabidopsis Sequence Match ( AT1G54330.1 )
(BLAST)

001: MAPMSLPPGF RFHPTDEELV AYYLDRKVNG QAIELEIIPE VDLYKCEPWD LPEKSFLPGN DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES
101: KKMKMGMKKT LVYYRGRAPH GLRTNWVMHE YRLTHAPSSS LKESYALCRV FKKNIQIPKR KGEEEEAEEE STSVGKEEEE EKEKKWRKCD GNYIEDESLK
201: RASAETSSSE LTQGVLLDEA NSSSIFALHF SSSLLDDHDH LFSNYSHQLP YHPPLQLQDF PQLSMNEAEI MSIQQDFQCR DSMNGTLDEI FSSSATFPAS
301: L

Arabidopsis Description

ANAC020NAC domain containing protein 20 [Source:UniProtKB/TrEMBL;Acc:Q67Z40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.