Factsheet for VIT_19s0085g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g01800.t01
VIT_07s0129g00030.t01
VIT_10s0003g04670.t01
VIT_14s0108g00750.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54330.1	VIT_06s0004g01800.t01	AT1G51190.1	21245844
AT1G54330.1	VIT_10s0003g04670.t01	AT2G34710.1	21245844
AT1G54330.1	VIT_07s0129g00030.t01	AT4G37650.1	21245844
AT1G54330.1	VIT_14s0108g00750.t01	AT5G39760.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71253	Canola	cytosol	44.48	70.22
VIT_17s0053g00740.t01	Wine grape	nucleus	47.69	56.3
AT1G54330.1	Thale cress	nucleus	55.87	52.16
CDX67739	Canola	nucleus	57.65	52.09
Bra003335.1-P	Field mustard	nucleus	55.16	51.49
CDY42413	Canola	nucleus	56.58	51.46
CDY10502	Canola	nucleus	55.52	50.81
Bra030807.1-P	Field mustard	nucleus	55.87	50.81
KRH13792	Soybean	nucleus	59.43	48.13
KRH43662	Soybean	nucleus	59.07	47.7
VIT_15s0048g02310.t01	Wine grape	cytosol	27.4	46.67
VIT_02s0012g01040.t01	Wine grape	nucleus	41.99	32.33
VIT_15s0048g02290.t01	Wine grape	nucleus	30.25	26.48
VIT_06s0080g00970.t01	Wine grape	nucleus	33.81	24.48
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	54.45	22.9
VIT_13s0019g05230.t01	Wine grape	nucleus	34.88	22.69
VIT_15s0048g02320.t01	Wine grape	nucleus	27.4	21.81
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	37.37	18.78
VIT_15s0048g02300.t01	Wine grape	nucleus	28.11	18.0
VIT_18s0001g01820.t01	Wine grape	nucleus	35.94	17.66
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	31.32	17.22
VIT_04s0044g01220.t01	Wine grape	nucleus	33.45	16.79
VIT_16s0098g00760.t01	Wine grape	mitochondrion	35.94	15.68
VIT_02s0025g03020.t01	Wine grape	nucleus	34.16	15.19
VIT_15s0048g02270.t01	Wine grape	nucleus	31.67	14.17

Protein Annotations

EntrezGene:100243251	wikigene:100243251	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM465684	ProteinID:CAN83436
ProteinID:CAN83436.1	ProteinID:CBI24139	ProteinID:CBI24139.3	UniProt:D7T112	EMBL:FN595503	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100243251
wikigene:LOC100243251	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF9	SUPFAM:SSF101941	UniParc:UPI00015CCED8	ArrayExpress:VIT_19s0085g00950	EnsemblPlantsGene:VIT_19s0085g00950	EnsemblPlants:VIT_19s0085g00950.t01
RefSeq:XP_002265403	RefSeq:XP_002265403.2	:	:	:	:

Description

No Description!

Coordinates

chr19:-:23474521..23476325

Molecular Weight (calculated)

32079.2 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.805

Length

281 amino acids

Sequence
(BLAST)

001: MAPMSLPPGF RFHPTDEELV AYYLDRKING GTIELEIIPE VDLYKCEPWD LPDKSFLPSK DMEWYFYSPR DRKYPNGSRT NRATRAGYWK ATGKDRAVHS
101: QKRPVGMKKT LVYYRGRAPH GLRTNWVMHE YRLIDSMCGS TSSLKDSYAL CRIFKKTIHV SKNKEEENAN VGKESAWGLE EHLSVDDTSG IESSQGREAG
201: DENFEQDCPK FPSDTSSSDI TQGTPFETGV TDDLQAQFPS DEANSSANLY SLNVQYYSSD LIQVQSSSWY NDEKYFLKVC S

Best Arabidopsis Sequence Match ( AT1G54330.1 )
(BLAST)

001: MAPMSLPPGF RFHPTDEELV AYYLDRKVNG QAIELEIIPE VDLYKCEPWD LPEKSFLPGN DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES
101: KKMKMGMKKT LVYYRGRAPH GLRTNWVMHE YRLTHAPSSS LKESYALCRV FKKNIQIPKR KGEEEEAEEE STSVGKEEEE EKEKKWRKCD GNYIEDESLK
201: RASAETSSSE LTQGVLLDEA NSSSIFALHF SSSLLDDHDH LFSNYSHQLP YHPPLQLQDF PQLSMNEAEI MSIQQDFQCR DSMNGTLDEI FSSSATFPAS
301: L

Arabidopsis Description

ANAC020NAC domain containing protein 20 [Source:UniProtKB/TrEMBL;Acc:Q67Z40]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.