Factsheet for VIT_06s0004g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0085g00050.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51190.1	VIT_19s0085g00050.t01	AT1G16490.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24688	Soybean	nucleus	78.0	77.58
Solyc11g061750.1.1	Tomato	nucleus	72.0	72.26
CDY72154	Canola	nucleus	42.91	71.73
PGSC0003DMT400035354	Potato	nucleus	71.64	71.51
CDY72251	Canola	nucleus	42.36	71.47
KRH29690	Soybean	nucleus	77.27	71.07
AT1G51190.1	Thale cress	nucleus	71.64	69.37
Bra018899.1-P	Field mustard	nucleus	70.36	69.23
CDY29623	Canola	nucleus	70.18	68.68
CDY35571	Canola	nucleus	70.18	68.56
CDY68782	Canola	nucleus	40.36	68.52
Bra030451.1-P	Field mustard	nucleus	70.0	68.26
Bra031234.1-P	Field mustard	nucleus	68.0	67.15
CDY57915	Canola	nucleus	68.73	67.02
CDY06387	Canola	nucleus	67.64	66.43
AT3G20840.1	Thale cress	nucleus	69.27	66.38
CDY19597	Canola	nucleus	68.18	63.78
Bra023921.1-P	Field mustard	nucleus	52.36	61.67
VIT_00s0772g00020.t01	Wine grape	nucleus	37.27	44.76
VIT_11s0052g00840.t01	Wine grape	nucleus	38.91	42.71
VIT_09s0002g01370.t01	Wine grape	nucleus	41.64	42.49
VIT_00s1291g00010.t01	Wine grape	nucleus	39.27	42.11
VIT_04s0023g00950.t01	Wine grape	nucleus	31.27	41.45
Os02t0614300-01	Rice	mitochondrion, nucleus	24.0	41.12
GSMUA_Achr2P05880_001	Banana	nucleus	42.55	40.91
VIT_11s0037g00870.t01	Wine grape	plastid	24.91	39.48
HORVU6Hr1G057060.3	Barley	nucleus	46.0	38.8
VIT_01s0026g01690.t01	Wine grape	nucleus	23.45	38.74
Zm00001d017207_P001	Maize	nucleus	46.91	38.17
TraesCS6B01G252000.1	Wheat	nucleus	45.45	37.76
TraesCS6D01G205300.1	Wheat	nucleus	45.27	37.67
TraesCS6A01G229500.1	Wheat	nucleus	45.09	37.63
KXG30667	Sorghum	nucleus	47.09	37.54
Os04t0504500-01	Rice	nucleus	44.36	37.08
TraesCS2D01G357600.1	Wheat	nucleus	43.64	36.64
VIT_09s0018g01650.t01	Wine grape	plastid	24.0	36.57
TraesCS2B01G378100.1	Wheat	nucleus	43.82	36.52
HORVU2Hr1G087310.1	Barley	nucleus	43.64	36.42
VIT_18s0001g08610.t01	Wine grape	nucleus	39.82	32.49
VIT_13s0047g00340.t01	Wine grape	plastid	21.82	32.34
VIT_14s0108g00050.t01	Wine grape	nucleus	23.64	32.18
VIT_07s0151g00440.t01	Wine grape	nucleus	39.27	31.86

Protein Annotations

EntrezGene:100256966	wikigene:100256966	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:AM469514	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN74963	ProteinID:CAN74963.1	ProteinID:CCB43728	ProteinID:CCB43728.1
InterPro:DNA-bd_dom_sf	UniProt:F6GU86	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100256966	wikigene:LOC100256966
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00015C76F7	ArrayExpress:VIT_06s0004g01800	EnsemblPlantsGene:VIT_06s0004g01800	EnsemblPlants:VIT_06s0004g01800.t01	RefSeq:XP_002285539
RefSeq:XP_002285539.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:2228790..2231310

Molecular Weight (calculated)

60873.2 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.670

Length

550 amino acids

Sequence
(BLAST)

001: MNSNNWLSFP LSPTHSSLPL NLHASQAQQF SLGLVNDNME SPFQNQEWNL INSHGSSEVP KIADFLGVSK SENQADLEAF NEIQANDSDY FFPNNSLLPV
101: PNPVAAAAVV ASPNSYEFQE NNNNLQSLTL SMGSGKGSTC ETSGNSSTSI VEAAPRRTLD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQSRKGR
201: QAGGYDKEEK AARAYDLAAL KYWGTSTTTN FPISNYEREL EEMKHMTRQE FVASIRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS
301: TEEEAAEAYD IAAIKFRGLN AVTNFDMNRY DVKSILESNT LPIGGGAAKR LKEAQAIESS RKREEMIALG SSFQYGSSSS SRLQTYPLMQ QQFEQPQPLL
401: TLQNQEPLLT LQNPEISQYP QDSQFHQNYI QTQLQLHQQS GSYLNHSSQS PQFYNSYLHN NPALLHGLMS MGSSSSVMEN NGSSSGSYNG GYFNNGLGVA
501: SNSTVASAVG SAEELPLIKV DYDMPAAGYG SWSGDSVQGQ NAGVFTMWND

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.