Factsheet for Bra023921.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57915	Canola	nucleus	99.79	82.62
AT3G20840.1	Thale cress	nucleus	94.0	76.48
Bra031234.1-P	Field mustard	nucleus	90.58	75.94
Bra018899.1-P	Field mustard	nucleus	74.3	62.08
Bra030451.1-P	Field mustard	nucleus	74.3	61.52
VIT_06s0004g01800.t01	Wine grape	nucleus	61.67	52.36
Solyc11g061750.1.1	Tomato	nucleus	59.53	50.73
KRH24688	Soybean	nucleus	59.53	50.27
PGSC0003DMT400035354	Potato	nucleus	59.1	50.09
KRH29690	Soybean	nucleus	59.53	46.49
Bra024394.1-P	Field mustard	nucleus	26.12	27.17
Bra013978.1-P	Field mustard	nucleus	30.62	24.7
HORVU6Hr1G057060.3	Barley	nucleus	34.26	24.54
GSMUA_Achr2P05880_001	Banana	nucleus	29.98	24.48
Bra006065.1-P	Field mustard	nucleus	28.69	24.1
Bra008040.1-P	Field mustard	nucleus	22.7	24.09
TraesCS6A01G229500.1	Wheat	nucleus	33.62	23.82
TraesCS6D01G205300.1	Wheat	nucleus	33.62	23.75
Os02t0614300-01	Rice	mitochondrion, nucleus	16.27	23.68
TraesCS6B01G252000.1	Wheat	nucleus	33.4	23.57
Zm00001d017207_P001	Maize	nucleus	34.05	23.52
TraesCS2D01G357600.1	Wheat	nucleus	32.98	23.51
TraesCS2B01G378100.1	Wheat	nucleus	33.19	23.48
Bra028584.1-P	Field mustard	nucleus	28.27	23.45
HORVU2Hr1G087310.1	Barley	nucleus	32.98	23.37
Bra009026.1-P	Field mustard	nucleus	28.69	23.34
Os04t0504500-01	Rice	nucleus	32.55	23.1
KXG30667	Sorghum	nucleus	34.05	23.04
Bra020444.1-P	Field mustard	nucleus	26.34	22.0
Bra023617.1-P	Field mustard	nucleus	23.34	20.34
Bra011782.1-P	Field mustard	nucleus	23.55	20.18
Bra017852.1-P	Field mustard	nucleus	23.77	19.96
Bra026082.1-P	Field mustard	nucleus	13.92	19.7
Bra035137.1-P	Field mustard	nucleus	12.42	18.83
Bra010610.1-P	Field mustard	nucleus	22.27	18.81
Bra007066.1-P	Field mustard	plastid	14.56	16.5
Bra003178.1-P	Field mustard	plastid	14.13	15.98

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra023921
EnsemblPlants:Bra023921.1	EnsemblPlants:Bra023921.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4E567	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002544725	SEG:seg	:	:	:	:

Description

AT3G20840 (E=5e-112) PLT1 | PLT1 (PLETHORA 1); transcription factor

Coordinates

chrA01:-:21041686..21044337

Molecular Weight (calculated)

50519.5 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.682

Length

467 amino acids

Sequence
(BLAST)

001: MNSNNWLGFP LSPNQSSLPP HEYNLGLVSD HMDNPFHTQE WSMINPHGGG EGGEVPKVAD FLGVSKPDEN QTDHLVAYND SDYYFHTNSL MPSVQSNDVV
101: VACDSNTPNN SYELQESAHN LQSLTLSMGT TGGNNAAAKA SPSEATGDNT SSGALAVVET ATPRRALDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR
201: EGQSRKGRQG TEEEAAEAYD IAAIKFRGLN AVTNFEINRY DVKAILESST LPIGGGAAKR LKEAQALESS RKREAEMIAL GSSFQYGGGS SSGGSGSSSS
301: RLQLQPYPLS IQQPLEPFLS LQNNDISHYN TNALDASSFN HHSYIQTQLH LHQQTNNYLQ QQSSQNSQQL YNAYLQSNPA LLHGLVSTSI VDNNNGGSNG
401: SYNTAAFLGN HGIGIGSSST VGSTEEFPTV KTDYDMPPSD STGEYGGWTG EPVQGSNPGG VFTMWNE

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.