Factsheet for Solyc11g061750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g005550.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51190.1	Solyc10g005550.1.1	AT1G16490.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035354	Potato	nucleus	98.18	97.64
VIT_06s0004g01800.t01	Wine grape	nucleus	72.26	72.0
CDY72154	Canola	nucleus	42.7	71.12
CDY72251	Canola	nucleus	41.97	70.55
KRH24688	Soybean	nucleus	71.17	70.52
CDY68782	Canola	nucleus	40.33	68.21
Bra018899.1-P	Field mustard	nucleus	69.53	68.16
AT1G51190.1	Thale cress	nucleus	69.89	67.43
CDY35571	Canola	nucleus	69.16	67.32
CDY29623	Canola	nucleus	68.98	67.26
Bra030451.1-P	Field mustard	nucleus	68.8	66.84
Bra031234.1-P	Field mustard	nucleus	66.79	65.71
KRH29690	Soybean	nucleus	71.35	65.38
CDY57915	Canola	nucleus	67.15	65.25
AT3G20840.1	Thale cress	nucleus	68.07	64.98
CDY06387	Canola	nucleus	66.06	64.64
CDY19597	Canola	nucleus	66.97	62.41
Bra023921.1-P	Field mustard	nucleus	50.73	59.53
Solyc07g018290.2.1	Tomato	nucleus	36.86	43.16
Solyc05g051380.2.1	Tomato	nucleus	38.14	41.72
GSMUA_Achr2P05880_001	Banana	nucleus	43.25	41.43
Solyc11g010710.1.1	Tomato	nucleus	38.5	38.86
Os02t0614300-01	Rice	mitochondrion, nucleus	22.63	38.63
Solyc06g068570.2.1	Tomato	nucleus	21.9	38.1
Solyc11g008560.1.1	Tomato	nucleus	46.53	37.67
HORVU6Hr1G057060.3	Barley	nucleus	44.34	37.27
Zm00001d017207_P001	Maize	nucleus	45.44	36.83
TraesCS6A01G229500.1	Wheat	nucleus	43.8	36.42
KXG30667	Sorghum	nucleus	45.8	36.38
TraesCS2D01G357600.1	Wheat	nucleus	43.43	36.34
TraesCS6D01G205300.1	Wheat	nucleus	43.8	36.31
TraesCS2B01G378100.1	Wheat	nucleus	43.61	36.21
HORVU2Hr1G087310.1	Barley	nucleus	43.43	36.12
TraesCS6B01G252000.1	Wheat	nucleus	43.61	36.1
Os04t0504500-01	Rice	nucleus	43.25	36.02
Solyc03g117720.2.1	Tomato	nucleus, plastid	24.09	35.58
Solyc12g010490.1.1	Tomato	plastid	23.36	35.16
Solyc04g077490.2.1	Tomato	nucleus	38.32	32.21
Solyc02g092050.2.1	Tomato	nucleus	37.77	32.04
Solyc06g066390.1.1	Tomato	nucleus	22.99	31.11
Solyc01g096860.1.1	Tomato	nucleus	24.82	30.7
Solyc08g076380.1.1	Tomato	nucleus	23.18	29.2

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4D8Y7	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF22	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc11g061750.1	EnsemblPlants:Solyc11g061750.1.1	UniParc:UPI00027693AE
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:48380308..48383953

Molecular Weight (calculated)

60742.7 Da

IEP (calculated)

6.562

GRAVY (calculated)

-0.816

Length

548 amino acids

Sequence
(BLAST)

001: MNSNNWLSFP LSPTHSSLPP HLQNAQSHHF SLGLVNETID NPFQNQEWNL MNTQGSNEVP KVADFLGMNK SENQSELIPY NDIQANDSDY LFQNNHLMPS
101: MQNALAPPPT NNYDLQENAC NIQSLTLSMG SGKGSTSETS ASPSANAATA SATAENSNNT SIVEAAPRRT LDTFGQRTSI YRGVTRHRWT GRYEAHLWDN
201: SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE LEDMKHMTRQ EFVAAIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA
301: GNKDLYLGTF TTEEEAAEAY DIAAIKFRGL NAVTNFDMNR YDVKAILESN TLPIGGGAAK RLKEAQALES SRKRDQEMMA LNSSFQYGNS NPLQAYPLMQ
401: QHQPSFDNSQ PLLTLQNHDI SQYNIQDSSS QFHQSYLQTQ LQLQNNSHQV SLYNNYLQNN QVFLHGLMNN NEGSSSGSYS TGGYFGNSPG LGGMSSNSTS
501: GNNGGGGGAH EEVALVKVDY DNMPSYNGWS GESSVQGSNP GVFSMWNE

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.