Factsheet for HORVU6Hr1G057060.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G252000.1	Wheat	nucleus	94.63	93.2
TraesCS6A01G229500.1	Wheat	nucleus	93.25	92.26
TraesCS6D01G205300.1	Wheat	nucleus	92.94	91.68
Zm00001d017207_P001	Maize	nucleus	79.91	77.07
KXG30667	Sorghum	nucleus	81.44	76.96
HORVU2Hr1G087310.1	Barley	nucleus	65.03	64.34
CDY68782	Canola	nucleus	26.53	53.4
GSMUA_Achr2P05880_001	Banana	nucleus	46.01	52.45
CDY72251	Canola	nucleus	25.77	51.53
CDY72154	Canola	nucleus	25.77	51.06
HORVU4Hr1G052880.2	Barley	nucleus	15.95	48.83
VIT_06s0004g01800.t01	Wine grape	nucleus	38.8	46.0
KRH24688	Soybean	nucleus	38.8	45.75
Solyc11g061750.1.1	Tomato	nucleus	37.27	44.34
HORVU7Hr1G111060.4	Barley	nucleus	31.75	44.33
PGSC0003DMT400035354	Potato	nucleus	37.27	44.1
CDY57915	Canola	nucleus	37.58	43.44
Bra018899.1-P	Field mustard	nucleus	37.12	43.29
CDY06387	Canola	nucleus	36.96	43.04
Bra031234.1-P	Field mustard	nucleus	36.66	42.91
AT1G51190.1	Thale cress	nucleus	37.27	42.78
CDY29623	Canola	nucleus	36.66	42.53
Bra030451.1-P	Field mustard	nucleus	36.66	42.38
AT3G20840.1	Thale cress	nucleus	37.27	42.33
CDY35571	Canola	nucleus	36.5	42.27
HORVU3Hr1G089160.2	Barley	nucleus	42.64	42.12
KRH29690	Soybean	nucleus	38.5	41.97
CDY19597	Canola	nucleus	36.81	40.82
HORVU4Hr1G076200.4	Barley	nucleus	32.52	38.48
Bra023921.1-P	Field mustard	nucleus	24.54	34.26
HORVU4Hr1G065990.2	Barley	nucleus	32.82	33.75
HORVU5Hr1G098450.2	Barley	nucleus	31.9	32.96
HORVU1Hr1G080350.3	Barley	nucleus	20.25	32.59
HORVU5Hr1G045290.10	Barley	nucleus, plastid	21.01	31.42

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A287U9I9	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU6Hr1G057060	EnsemblPlants:HORVU6Hr1G057060.3	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B48842C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:368521622..368527908

Molecular Weight (calculated)

69598.2 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.557

Length

652 amino acids

Sequence
(BLAST)

001: MSSGNDWLGF SLSGQESPQP HQDSSPPAGI DISGASDFYG LPTQPAPDAQ LGVPGHQPSY GITEAAFNRG AHETHDWSMR GDLDYTGGAS ELSMLVGSSA
101: VGGKRAMEAE TEPKLEDFLG GNSFVSEQDQ AGGFLFSGVP MATSTTSHSR SNTMELSMIK SWLRNNQVPQ AAPHPAQQPQ PHEGMSTDAS ASSFDALGRN
201: GALVVAGSSQ SLALSMSTGS GSHLPMDVVG SSATGGVSES TSSENKRTSG AMDSPGGAVE AVARKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR
301: EGQSRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI NTYEKEVDEM KHMTRQEYIA YLRRNSSGFS RGASKYRGVT RHHQHGRWQA RIGRVAGNKD
401: LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK TILESSTLPV GGAARRLKEA ADHPEAGATI WRAGMHGGVI SQLTDVGMGA YASYPHGWPT
501: IAFQQPSPLS VHYPYVAQPA RGWCKPEQDA TVAAQNLQDL QQLHLGTAAH NYFQASSSST VYNGGGYQQG TGGNAFLMPA TAVMDEQGHS STATNLGSTC
601: SYGDEEGKLN IGYDAMAAMA STAADPYAAA STVSIARANG YSNHWSSPFN GM

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.