CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031234.1-P	Field mustard	nucleus	97.5	98.03
CDY19597	Canola	nucleus	97.68	93.03
CDY57915	Canola	nucleus	92.14	91.49
AT3G20840.1	Thale cress	nucleus	92.5	90.24
CDY68782	Canola	nucleus	51.61	89.2
CDY72154	Canola	nucleus	44.64	75.99
CDY29623	Canola	nucleus	75.71	75.44
CDY35571	Canola	nucleus	75.71	75.31
CDY72251	Canola	nucleus	43.39	74.54
VIT_06s0004g01800.t01	Wine grape	nucleus	66.43	67.64
KRH24688	Soybean	nucleus	65.36	66.18
Solyc11g061750.1.1	Tomato	nucleus	64.64	66.06
PGSC0003DMT400035354	Potato	nucleus	64.29	65.34
KRH29690	Soybean	nucleus	65.54	61.37
CDX72655	Canola	endoplasmic reticulum, golgi	29.64	49.7
CDY33356	Canola	nucleus	16.79	48.96
CDY18032	Canola	nucleus	24.82	47.93
CDX78387	Canola	nucleus	33.93	47.26
CDY68823	Canola	nucleus	28.21	46.61
CDX97022	Canola	nucleus	33.57	45.97
CDY14577	Canola	nucleus	36.61	45.15
CDY16924	Canola	nucleus	28.75	42.59
CDY08784	Canola	nucleus	36.79	40.31
CDX82142	Canola	nucleus	32.86	40.26
GSMUA_Achr2P05880_001	Banana	nucleus	41.07	40.21
CDY49856	Canola	nucleus	32.68	40.04
Os02t0614300-01	Rice	mitochondrion, nucleus	22.5	39.25
CDY42263	Canola	nucleus	38.39	39.16
CDX88560	Canola	nucleus	21.61	39.16
CDY35066	Canola	nucleus	23.04	39.09
CDX85454	Canola	nucleus	39.46	38.84
CDY47943	Canola	nucleus	38.21	38.56
CDX69826	Canola	nucleus	38.21	38.21
CDY55941	Canola	nucleus	38.04	38.17
CDX87360	Canola	nucleus	21.25	37.9
CDY40102	Canola	nucleus	37.68	37.88
HORVU6Hr1G057060.3	Barley	nucleus	43.04	36.96
TraesCS6D01G205300.1	Wheat	nucleus	43.39	36.76
TraesCS6A01G229500.1	Wheat	nucleus	43.04	36.57
CDX85757	Canola	nucleus	37.68	36.44
TraesCS6B01G252000.1	Wheat	nucleus	42.86	36.25
Zm00001d017207_P001	Maize	nucleus	43.75	36.24
Os04t0504500-01	Rice	nucleus	42.5	36.17
TraesCS2D01G357600.1	Wheat	nucleus	42.14	36.03
TraesCS2B01G378100.1	Wheat	nucleus	42.32	35.91
HORVU2Hr1G087310.1	Barley	nucleus	42.14	35.81
KXG30667	Sorghum	nucleus	43.75	35.51
CDX75673	Canola	nucleus	34.11	34.85
CDX69324	Canola	nucleus	33.93	34.23
CDY50260	Canola	nucleus	33.39	33.39
CDY44027	Canola	nucleus	33.21	33.27
CDX73488	Canola	nucleus	24.11	32.69
CDX78230	Canola	plastid	24.11	32.53
CDX67595	Canola	plastid	23.39	31.49
CDY71263	Canola	nucleus	11.07	19.02

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078EZK9	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY06387	ProteinID:CDY06387	ProteinID:CDY06387.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00122353001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EDCE48	SEG:seg	:	:

Description

BnaC05g31430D

Coordinates

chrLK031969:+:251591..254204

Molecular Weight (calculated)

61436.7 Da

IEP (calculated)

6.472

GRAVY (calculated)

-0.694

Length

560 amino acids

Sequence
(BLAST)

001: MNSNNWLGFP LSLNHSSLPP HEYNIGLVSD HMDNPFQTQE WNMINPHGGG GEVPKVADFL GVSKPDENQP DHIVAYNDPG YYFHTTNSLM PNVQSNDVVV
101: ACDSNNPNDS YELQESAHNL QSLTLSMGTT GGSNAVAKAL PPEVTGDNTS GGALAVAETA TPRRALDTFG QRTSIYRGVT RHRWTGRYEA HLWDNTCRRE
201: GQSRKGRQVY LGGYDKEDKA ARSYDLAALK YWGPSTTTNF PITNYEKELE EMKHMTRQEF VAAIRRKSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN
301: KDLYLGTFST EEEAAEAYDI AAIKFRGLNA VTNFEMNRYD VKAILESSTL PIGGGAAKRL KEAQALESSR KREAEMIALG SSFQYGSGSS SSRLQLQPYP
401: LSIQQPLEPF LSLQNNDISH YNTNAHDASS FNHNSYIQTQ LHLHQQTNNY LQQQSGQNSQ QLYNAYLQSN PDLLHGVVST SIVDNNNNGG SSGSYNTAAF
501: LGHHGIGVGT SSTVGSTGEF PAVKTDYDMA SSDGNGGYGG WTGESVQGSN PGGVFTMWNE

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.