CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97022	Canola	nucleus	67.5	92.42
Bra009026.1-P	Field mustard	nucleus	93.75	91.46
CDY40102	Canola	nucleus	83.57	84.02
CDX85757	Canola	nucleus	84.64	81.87
CDX78387	Canola	nucleus	58.57	81.59
AT5G10510.3	Thale cress	nucleus	85.0	78.81
VIT_00s0772g00020.t01	Wine grape	nucleus	53.93	65.94
VIT_00s1291g00010.t01	Wine grape	nucleus	60.18	65.69
CDY14577	Canola	nucleus	52.86	65.2
KRH74476	Soybean	nucleus	58.75	64.51
KRH39470	Soybean	nucleus	58.57	64.06
Solyc05g051380.2.1	Tomato	nucleus	53.21	59.48
CDY08784	Canola	nucleus	52.86	57.93
GSMUA_Achr1P24940_001	Banana	nucleus	30.36	50.45
CDY33356	Canola	nucleus	16.96	49.48
CDY68782	Canola	nucleus	28.04	48.46
CDY72154	Canola	nucleus	27.68	47.11
CDX72655	Canola	endoplasmic reticulum, golgi	27.86	46.71
CDY72251	Canola	nucleus	27.14	46.63
CDY18032	Canola	nucleus	23.75	45.86
TraesCS4D01G182100.1	Wheat	nucleus	30.71	45.74
TraesCS4B01G180600.1	Wheat	nucleus	30.54	45.6
TraesCS4A01G123800.1	Wheat	nucleus	30.54	45.24
HORVU4Hr1G052880.2	Barley	nucleus	17.14	45.07
Os03t0313100-01	Rice	extracellular, nucleus	32.32	42.0
KXG39508	Sorghum	extracellular, nucleus	31.79	41.69
CDY68823	Canola	nucleus	25.0	41.3
Zm00001d028919_P001	Maize	extracellular, nucleus	31.07	40.94
CDX88560	Canola	nucleus	22.32	40.45
CDY35066	Canola	nucleus	23.39	39.7
CDX87360	Canola	nucleus	22.14	39.49
CDY06387	Canola	nucleus	38.21	38.21
CDX85454	Canola	nucleus	38.75	38.14
CDY16924	Canola	nucleus	25.71	38.1
CDY55941	Canola	nucleus	37.86	37.99
CDY29623	Canola	nucleus	37.68	37.54
CDY57915	Canola	nucleus	37.68	37.41
CDY35571	Canola	nucleus	37.5	37.3
CDX82142	Canola	nucleus	30.36	37.2
CDY49856	Canola	nucleus	30.18	36.98
CDY19597	Canola	nucleus	38.04	36.22
CDY42263	Canola	nucleus	34.46	35.15
CDY47943	Canola	nucleus	34.46	34.77
CDX75673	Canola	nucleus	32.32	33.03
CDX69324	Canola	nucleus	31.79	32.07
GSMUA_Achr11P...	Banana	nucleus	31.61	32.07
PGSC0003DMT400037835	Potato	nucleus	29.82	31.99
CDY44027	Canola	nucleus	31.61	31.66
CDX73488	Canola	nucleus	23.21	31.48
CDY50260	Canola	nucleus	31.43	31.43
CDX78230	Canola	plastid	23.04	31.08
CDX67595	Canola	plastid	22.68	30.53
CDY71263	Canola	nucleus	11.07	19.02

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078BYL0	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDX69826	ProteinID:CDX69826	ProteinID:CDX69826.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00135885001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF33	SMART:SM00380
SUPFAM:SSF54171	TMHMM:TMhelix	UniParc:UPI0004EE88C2	SEG:seg	:	:

Description

BnaA10g21750D

Coordinates

chrLK031790:-:1982891..1987519

Molecular Weight (calculated)

62257.9 Da

IEP (calculated)

6.713

GRAVY (calculated)

-0.561

Length

560 amino acids

Sequence
(BLAST)

001: MAPMTNWLTF SLSPMEMLRS SDDQSQFVSY DASSAASSSP YLLDNFYGWT NQKPQELFFK EAAAASMADS TILTTFVDSQ THSQSHIPKL EDFLGGDVRY
101: SDNSQSETQD SSSLSQIYDP RHHQNQNQNQ TGFYSDHNPD FNKTMAGFQT AFSTNSGSEV DDSASIARTH LAGEYLGHVV ESSGPELGFH GGASTGGALS
201: LGVNINNANH RTSNDTNQIT EHHYNKPVVT VETSDCSNKK VADTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGIHFFF FFNLISILLL
301: QTFLNILIYL GGYDKEDKAA RAYDLAALKY WNAAATTNFP IANYSKELEE MKHMTKLEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK
401: DLYLGTFATE EEAAEAYDIA AIKFRGINAV TNFEMNRYDV EAIMKSALPI GGAAKRLKLS LESAASAEQK PNSSTNNSSI NFALCPNSDV QSQMIPCGIP
501: FDAAALYHHQ QQQQQQNFFQ HFHAASDSAA SNNNNSNVQG SMGLMAPNAA EFFLWPNQSY

Best Arabidopsis Sequence Match ( AT5G10510.3 )
(BLAST)

001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVFYSFFGMC YLIWGCILAL LKINSGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ
501: QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP
601: NQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.