Factsheet for TraesCS4B01G180600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	extracellular, mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G182100.1	Wheat	nucleus	96.53	96.28
TraesCS4A01G123800.1	Wheat	nucleus	96.0	95.24
HORVU4Hr1G052880.2	Barley	nucleus	53.33	93.9
Os03t0313100-01	Rice	extracellular, nucleus	69.07	60.09
Zm00001d028919_P001	Maize	extracellular, nucleus	63.73	56.24
KXG39508	Sorghum	extracellular, nucleus	63.47	55.74
PGSC0003DMT400041758	Potato	nucleus	34.93	50.19
GSMUA_Achr1P24940_001	Banana	nucleus	42.4	47.18
CDX78387	Canola	nucleus	43.73	40.8
KRG99477	Soybean	nucleus	46.13	39.41
KRH45549	Soybean	nucleus	46.67	39.15
CDX97022	Canola	nucleus	42.4	38.88
CDY14577	Canola	nucleus	44.53	36.78
Bra024394.1-P	Field mustard	nucleus	43.73	36.53
VIT_00s0772g00020.t01	Wine grape	nucleus	44.0	36.03
TraesCS7B01G401400.1	Wheat	nucleus	44.27	35.55
AT5G65510.2	Thale cress	nucleus	46.4	34.94
TraesCS2B01G534000.1	Wheat	nucleus	44.0	34.16
Solyc05g051380.2.1	Tomato	nucleus	45.33	33.93
KRH74476	Soybean	nucleus	46.13	33.92
KRH39470	Soybean	nucleus	45.87	33.59
TraesCS6B01G153800.1	Wheat	nucleus	30.13	33.53
VIT_00s1291g00010.t01	Wine grape	nucleus	45.87	33.53
Solyc11g010710.1.1	Tomato	nucleus	47.47	32.78
CDY08784	Canola	nucleus	44.27	32.49
TraesCS5B01G220400.2	Wheat	nucleus	33.6	31.74
Bra006065.1-P	Field mustard	nucleus	46.13	31.12
TraesCS4B01G136400.1	Wheat	plastid	27.2	30.91
CDX69826	Canola	nucleus	45.6	30.54
Bra028584.1-P	Field mustard	nucleus	45.6	30.37
CDY40102	Canola	nucleus	45.07	30.34
GSMUA_Achr11P...	Banana	nucleus	43.73	29.71
Bra009026.1-P	Field mustard	nucleus	45.33	29.62
TraesCS4B01G292900.1	Wheat	nucleus	41.33	29.36
CDX85757	Canola	nucleus	44.8	29.02
AT5G10510.3	Thale cress	nucleus	45.6	28.31
TraesCS3B01G368400.1	Wheat	plastid	28.8	28.05
TraesCS6B01G252000.1	Wheat	nucleus	48.0	27.19
TraesCS2B01G268100.2	Wheat	nucleus	43.47	27.17
TraesCS2B01G378100.1	Wheat	nucleus	47.2	26.82
TraesCS5B01G410200.1	Wheat	nucleus	44.0	26.27
PGSC0003DMT400037835	Potato	nucleus	36.27	26.05
TraesCS4B01G235900.2	Wheat	nucleus	43.73	25.95
TraesCS3B01G427300.1	Wheat	nucleus, plastid	45.33	22.7

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4B01G180600	EnsemblPlants:TraesCS4B01G180600.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:395605116..395609932

Molecular Weight (calculated)

40884.9 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.476

Length

375 amino acids

Sequence
(BLAST)

001: MSPPTNGSAS LPLTGLSDAV LFPFDGFSAD DFFATAPPPP PPLGADPGRL LLESSRNDAH ASTGLAVAAP VETTGSPSAL APLPLTPSSG QRTSCYRGVT
101: RHRWTKRYEA HLWDNTCRRE GQKRKGRQVY LGGYEKEDRA ARAYDLAALK YWGVNATTNF PKENYIRELE EMQNMSRQEL VASLRRKSSG FSRGASVYRG
201: VTRHHQHGRW QARIGRVAGN KDLYLGTFAT EEEAAEAYDI AALKFRGDNA VTNFEPSRYN LEAIARSDLP VNGRRMSSHK PAAAPAPEAQ GEITFVSSAL
301: PIPQQSGSDV QVPPYVLHGL LQLQASEPLH ALPLSSYSFG EPSFYWPFGD VEQKVQLDSK VEVAGGILQL ANSAV

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.