CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028584.1-P	Field mustard	nucleus	97.85	96.8
CDX85757	Canola	nucleus	98.03	94.3
CDX97022	Canola	nucleus	61.4	83.62
CDX69826	Canola	nucleus	84.02	83.57
AT5G10510.3	Thale cress	nucleus	89.77	82.78
CDX78387	Canola	nucleus	59.07	81.84
VIT_00s0772g00020.t01	Wine grape	nucleus	54.58	66.38
VIT_00s1291g00010.t01	Wine grape	nucleus	60.68	65.89
CDY14577	Canola	nucleus	52.78	64.76
KRH39470	Soybean	nucleus	58.71	63.87
KRH74476	Soybean	nucleus	58.17	63.53
Solyc05g051380.2.1	Tomato	nucleus	52.96	58.88
CDY08784	Canola	nucleus	52.6	57.34
GSMUA_Achr1P24940_001	Banana	nucleus	30.16	49.85
CDY68782	Canola	nucleus	28.9	49.69
CDY33356	Canola	nucleus	16.88	48.96
CDY72154	Canola	nucleus	28.01	47.42
CDX72655	Canola	endoplasmic reticulum, golgi	28.19	47.01
CDY72251	Canola	nucleus	27.47	46.93
CDY18032	Canola	nucleus	24.24	46.55
HORVU4Hr1G052880.2	Barley	nucleus	17.59	46.01
TraesCS4D01G182100.1	Wheat	nucleus	30.52	45.21
TraesCS4B01G180600.1	Wheat	nucleus	30.34	45.07
TraesCS4A01G123800.1	Wheat	nucleus	30.16	44.44
Os03t0313100-01	Rice	extracellular, nucleus	32.67	42.23
CDY68823	Canola	nucleus	25.49	41.89
KXG39508	Sorghum	extracellular, nucleus	31.78	41.45
Zm00001d028919_P001	Maize	extracellular, nucleus	31.6	41.41
CDX88560	Canola	nucleus	22.08	39.81
CDY35066	Canola	nucleus	23.52	39.7
CDX87360	Canola	nucleus	22.08	39.17
CDY16924	Canola	nucleus	26.39	38.89
CDX85454	Canola	nucleus	39.68	38.84
CDY55941	Canola	nucleus	38.42	38.35
CDY06387	Canola	nucleus	37.88	37.68
CDX82142	Canola	nucleus	30.88	37.64
CDY29623	Canola	nucleus	37.88	37.54
CDY49856	Canola	nucleus	30.7	37.42
CDY57915	Canola	nucleus	37.88	37.41
CDY35571	Canola	nucleus	37.7	37.3
CDY19597	Canola	nucleus	38.06	36.05
CDY42263	Canola	nucleus	35.01	35.52
CDY47943	Canola	nucleus	35.19	35.32
CDX75673	Canola	nucleus	33.21	33.76
CDX69324	Canola	nucleus	32.67	32.79
CDY44027	Canola	nucleus	32.67	32.56
CDY50260	Canola	nucleus	32.5	32.32
GSMUA_Achr11P...	Banana	nucleus	31.24	31.52
CDX73488	Canola	nucleus	23.16	31.23
PGSC0003DMT400037835	Potato	nucleus	29.08	31.03
CDX78230	Canola	plastid	22.98	30.84
CDX67595	Canola	plastid	22.44	30.05
CDY71263	Canola	nucleus	11.67	19.94

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078HQK4	UniProt:A0A078HQK4	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY40102	ProteinID:CDY40102	ProteinID:CDY40102.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00069022001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF33
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EE7D36	SEG:seg	:	:

Description

BnaC02g00280DBnaC02g00280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQK4]

Coordinates

chrLK032463:+:203930..207906

Molecular Weight (calculated)

62645.0 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.829

Length

557 amino acids

Sequence
(BLAST)

001: MAPMTNWLTF SLSPMDMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKDE AQIAASMADS TILATFVDPQ THSHNHIPKL EDFLGEVRYS
101: DNSQTETQDS SSLTHIYDPR HHQNQNQTGF YTDHNHEFKT MAGFQTAFST NSGSEVEDSA SIGRTHLAGE YLGHVVESSG GPELGFHGGA NNGGALSLGV
201: NVNNSNHRTS DDHTQITEHH YRGNNNGERT NNEKTVSEKE KPVVAVETSD CSNKKIADTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQV
301: YLGGYDKEDK AARAYDLAAL KYWNATATTN FPITNYSKEL EEMKHMTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA
401: TEEEAAEAYD IAAIKFRGIN AVTNFEMNRY DVEAIMKSAL PIGGAAKQQK PILGHQHQLH HFQQQQQQQI QSSPNHSSIN FAQSQMIPCG IPFEAAALYH
501: HQQQQQQQQQ QNFFQHFPAN VRATDSTGSN NNSNVQGSMG LMVPNQAEFF LWPNQSY

Best Arabidopsis Sequence Match ( AT5G10510.6 )
(BLAST)

001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVYLGGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT
401: FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ QQQLQLQSSP NHSSINFALC
501: PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP NQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.