Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035137.1-P | Field mustard | nucleus | 97.73 | 98.05 |
| CDX87360 | Canola | nucleus | 96.76 | 95.22 |
| AT1G79700.2 | Thale cress | nucleus | 79.94 | 78.91 |
| CDY33356 | Canola | nucleus | 47.57 | 76.56 |
| CDY35066 | Canola | nucleus | 75.08 | 70.3 |
| KRH47304 | Soybean | nucleus | 62.78 | 66.9 |
| KRH44591 | Soybean | plastid | 62.78 | 61.98 |
| Solyc06g068570.2.1 | Tomato | nucleus | 60.52 | 59.37 |
| VIT_09s0018g01650.t01 | Wine grape | plastid | 63.75 | 54.57 |
| Solyc03g117720.2.1 | Tomato | nucleus, plastid | 63.75 | 53.1 |
| GSMUA_Achr5P04670_001 | Banana | nucleus | 61.16 | 52.5 |
| Os09t0423800-01 | Rice | nucleus | 59.22 | 50.14 |
| TraesCS6B01G153800.1 | Wheat | nucleus | 52.75 | 48.37 |
| TraesCS5D01G229400.1 | Wheat | nucleus | 61.81 | 48.23 |
| TraesCS5B01G220400.2 | Wheat | nucleus | 61.81 | 48.11 |
| TraesCS5A01G221600.1 | Wheat | nucleus | 61.16 | 47.73 |
| OQU89519 | Sorghum | plastid | 58.58 | 45.82 |
| Os08t0442400-01 | Rice | nucleus | 60.84 | 44.87 |
| Zm00001d020540_P002 | Maize | plastid | 58.25 | 43.8 |
| TraesCS6A01G125700.1 | Wheat | nucleus | 49.19 | 43.55 |
| Zm00001d032144_P001 | Maize | nucleus | 50.16 | 38.27 |
| CDX78230 | Canola | plastid | 50.81 | 37.83 |
| CDX73488 | Canola | nucleus | 50.49 | 37.77 |
| CDX67595 | Canola | plastid | 50.49 | 37.5 |
| OQU80549 | Sorghum | nucleus | 52.75 | 37.05 |
| CDX72655 | Canola | endoplasmic reticulum, golgi | 39.16 | 36.23 |
| CDY18032 | Canola | nucleus | 33.33 | 35.52 |
| CDY72251 | Canola | nucleus | 31.07 | 29.45 |
| CDX78387 | Canola | nucleus | 38.19 | 29.35 |
| CDY68823 | Canola | nucleus | 32.04 | 29.2 |
| CDY72154 | Canola | nucleus | 31.07 | 29.18 |
| CDY68782 | Canola | nucleus | 29.77 | 28.4 |
| CDX97022 | Canola | nucleus | 37.22 | 28.12 |
| CDY14577 | Canola | nucleus | 40.13 | 27.31 |
| CDY16924 | Canola | nucleus | 32.69 | 26.72 |
| CDX82142 | Canola | nucleus | 38.51 | 26.04 |
| CDY49856 | Canola | nucleus | 38.51 | 26.04 |
| CDY42263 | Canola | nucleus | 42.39 | 23.86 |
| CDY08784 | Canola | nucleus | 38.84 | 23.48 |
| CDY47943 | Canola | nucleus | 42.07 | 23.42 |
| CDX75673 | Canola | nucleus | 41.42 | 23.36 |
| CDY55941 | Canola | nucleus | 42.07 | 23.3 |
| CDX85454 | Canola | nucleus | 42.39 | 23.02 |
| CDX69324 | Canola | nucleus | 41.1 | 22.88 |
| CDX69826 | Canola | nucleus | 40.45 | 22.32 |
| CDY40102 | Canola | nucleus | 39.81 | 22.08 |
| CDY06387 | Canola | nucleus | 39.16 | 21.61 |
| CDY50260 | Canola | nucleus | 38.84 | 21.43 |
| CDY29623 | Canola | nucleus | 38.84 | 21.35 |
| CDY44027 | Canola | nucleus | 38.51 | 21.29 |
| CDY35571 | Canola | nucleus | 38.51 | 21.14 |
| CDY57915 | Canola | nucleus | 38.51 | 21.1 |
| CDX85757 | Canola | nucleus | 39.48 | 21.07 |
| CDY19597 | Canola | nucleus | 38.51 | 20.24 |
| CDY71263 | Canola | nucleus | 11.33 | 10.74 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078DH92 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX88560 | ProteinID:CDX88560 | ProteinID:CDX88560.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00148122001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF20 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EE0FF4 | SEG:seg | : | : | : |
Description
BnaC06g40040D
Coordinates
chrLK031855:-:1642345..1645199
Molecular Weight (calculated)
35104.4 Da
IEP (calculated)
8.054
GRAVY (calculated)
-0.944
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKLSQRNKK IIEDETIDKT ATASASPVVF KCKRKRKSPP QNAPPQRSSS HRGVTSRHRW TGRYEAHLWD KNSWNETQTK KGRQVYLGAY DEEEAAARAY
101: DLAALKYWGR DTLLNFPLST YEEDVKEMEA HSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA ARAYDIAAIE
201: YRGLNAVTNF DVSRYLDLPA TKKPNAAASP ESPNDQTSSD DNNFTKTEEV TEPSTPPEAI QSRRSFPDDI QTYFECQDSG KSATEEDVIF GGFSSFISPG
301: LCNEFDYWS
101: DLAALKYWGR DTLLNFPLST YEEDVKEMEA HSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA ARAYDIAAIE
201: YRGLNAVTNF DVSRYLDLPA TKKPNAAASP ESPNDQTSSD DNNFTKTEEV TEPSTPPEAI QSRRSFPDDI QTYFECQDSG KSATEEDVIF GGFSSFISPG
301: LCNEFDYWS
001: MAKVSGRSKK TIVDDEISDK TASASESASI ALTSKRKRKS PPRNAPLQRS SPYRGVTRHR WTGRYEAHLW DKNSWNDTQT KKGRQVYLGA YDEEEAAARA
101: YDLAALKYWG RDTLLNFPLP SYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AAIAYDIAAI
201: EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP ESSDDNKSPK SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY
301: INPGFYNEFD YGP
101: YDLAALKYWG RDTLLNFPLP SYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AAIAYDIAAI
201: EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP ESSDDNKSPK SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY
301: INPGFYNEFD YGP
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A8MQS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.