Factsheet for VIT_09s0018g01650.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0317g00140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16060.1	VIT_00s0317g00140.t01	AT3G55150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47304	Soybean	nucleus	60.39	75.17
VIT_11s0037g00870.t01	Wine grape	plastid	71.47	74.35
CDY33356	Canola	nucleus	37.4	70.31
KRH44591	Soybean	plastid	60.66	69.97
Solyc03g117720.2.1	Tomato	nucleus, plastid	70.64	68.73
Solyc06g068570.2.1	Tomato	nucleus	58.17	66.67
Os09t0423800-01	Rice	nucleus	64.54	63.84
CDX88560	Canola	nucleus	54.57	63.75
Bra035137.1-P	Field mustard	nucleus	54.29	63.64
Bra026082.1-P	Field mustard	nucleus	57.89	63.33
CDY35066	Canola	nucleus	57.89	63.33
AT1G16060.1	Thale cress	nucleus	59.56	62.32
AT1G79700.2	Thale cress	nucleus	54.02	62.3
CDX87360	Canola	nucleus	53.19	61.15
TraesCS5D01G229400.1	Wheat	nucleus	64.54	58.84
TraesCS5B01G220400.2	Wheat	nucleus	64.27	58.44
TraesCS5A01G221600.1	Wheat	nucleus	63.99	58.33
GSMUA_Achr5P04670_001	Banana	nucleus	57.89	58.06
Zm00001d020540_P002	Maize	plastid	62.88	55.23
OQU89519	Sorghum	plastid	60.39	55.19
TraesCS6B01G153800.1	Wheat	nucleus	50.42	54.01
Os08t0442400-01	Rice	nucleus	59.83	51.55
TraesCS6A01G125700.1	Wheat	nucleus	46.81	48.42
VIT_01s0026g01690.t01	Wine grape	nucleus	43.21	46.85
Zm00001d032144_P001	Maize	nucleus	50.69	45.19
OQU80549	Sorghum	nucleus	51.52	42.27
VIT_14s0108g00050.t01	Wine grape	nucleus	46.54	41.58
VIT_13s0047g00340.t01	Wine grape	plastid	41.55	40.43
VIT_00s0772g00020.t01	Wine grape	nucleus	35.46	27.95
VIT_11s0052g00840.t01	Wine grape	nucleus	37.95	27.35
VIT_00s1291g00010.t01	Wine grape	nucleus	36.29	25.54
VIT_09s0002g01370.t01	Wine grape	nucleus	36.84	24.68
VIT_06s0004g01800.t01	Wine grape	nucleus	36.57	24.0
VIT_18s0001g08610.t01	Wine grape	nucleus	40.17	21.51
VIT_04s0023g00950.t01	Wine grape	nucleus	24.38	21.2
VIT_07s0151g00440.t01	Wine grape	nucleus	38.78	20.65

Protein Annotations

EntrezGene:100260401	wikigene:100260401	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB49718	ProteinID:CCB49718.1	InterPro:DNA-bd_dom_sf	UniProt:F6HBY5	EMBL:FN595513
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100260401	wikigene:LOC100260401	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF68	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001983F6A	ArrayExpress:VIT_09s0018g01650
EnsemblPlantsGene:VIT_09s0018g01650	EnsemblPlants:VIT_09s0018g01650.t01	unigene:Vvi.22416	RefSeq:XP_002272159	RefSeq:XP_002272159.1	SEG:seg

Description

No Description!

Coordinates

chr9:+:18937936..18941364

Molecular Weight (calculated)

40079.3 Da

IEP (calculated)

7.626

GRAVY (calculated)

-0.856

Length

361 amino acids

Sequence
(BLAST)

001: MAKTSQKSQK TTGNSTNNNG GSVAKVKRTR KSVPRDSPPQ RSSIFRGVTR HRWTGRYEAH LWDKNCWNES QNKKGRQVYL GAYDDEEAAA HAYDLAALKY
101: WGQETILNFP LSAYQEELKE MEGQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ EEAATAYDMA AIEYRGLNAV
201: TNFDLSRYIK WLRPNQSDSV GSMQNPNGQS SPAPNPNPSD HELGLSFLQQ QHGSDATELP LSHARSGAGG SGSGGGGGGA SSALGLLLQS SKFKEMLERT
301: STADCPLTPP DQIEMPRSSF PDDIQTYFDC QETNSYGESD DIIFGDLKYF SSPMFQCELD T

Best Arabidopsis Sequence Match ( AT1G16060.1 )
(BLAST)

001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.