Factsheet for VIT_01s0026g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00050.t01	Wine grape	nucleus	73.87	60.89
KRH45852	Soybean	nucleus	66.07	54.05
KRG99157	Soybean	nucleus	65.47	53.69
GSMUA_Achr3P32510_001	Banana	nucleus	56.46	44.44
VIT_11s0037g00870.t01	Wine grape	plastid	46.25	44.38
VIT_09s0018g01650.t01	Wine grape	plastid	46.85	43.21
VIT_13s0047g00340.t01	Wine grape	plastid	40.24	36.12
VIT_00s0772g00020.t01	Wine grape	nucleus	38.14	27.73
VIT_11s0052g00840.t01	Wine grape	nucleus	39.64	26.35
VIT_00s1291g00010.t01	Wine grape	nucleus	38.14	24.76
VIT_09s0002g01370.t01	Wine grape	nucleus	38.44	23.75
VIT_06s0004g01800.t01	Wine grape	nucleus	38.74	23.45
VIT_04s0023g00950.t01	Wine grape	nucleus	26.13	20.96
VIT_07s0151g00440.t01	Wine grape	nucleus	39.34	19.32
VIT_18s0001g08610.t01	Wine grape	nucleus	38.74	19.14

Protein Annotations

EntrezGene:100251939	wikigene:100251939	MapMan:15.5.7.3	MapMan:26.9.2.2	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CCB56578	ProteinID:CCB56578.1	InterPro:DNA-bd_dom_sf	UniProt:F6HPF0
EMBL:FN596002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100251939	wikigene:LOC100251939	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF73	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000210800A
ArrayExpress:VIT_01s0026g01690	EnsemblPlantsGene:VIT_01s0026g01690	EnsemblPlants:VIT_01s0026g01690.t01	RefSeq:XP_002270149	RefSeq:XP_002270149.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:10860182..10861942

Molecular Weight (calculated)

37746.5 Da

IEP (calculated)

9.934

GRAVY (calculated)

-0.686

Length

333 amino acids

Sequence
(BLAST)

001: MEMTTVKSEL GLERGRLCTA ETDALEVTKC VKRRRRDPSA VTPGCSKQGE QQKQVLLQAG QSITAIATTM KRSSRFRGVS RHRWTGRFEA HLWDKGSWNV
101: TQRKKGKQGA YDEEESAARA YDLAALKYWG PSTFTNFPVS DYEKEIEIMQ GLTKEEYLAS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL
201: YLGTYSTQEE AAHAYDIAAI EYRGINAVTN FELSTYVRWL RPRATALTPQ EPRSNSIMQA SSNCLPNEEV ELSFLSPNPF TVDDLATPLK QEKFQREVSI
301: SPCTKSSSPT ALSLLHRSSV FRQLVEKNSN SIE

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.