Factsheet for VIT_11s0052g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P13660_001	Banana	nucleus	55.49	63.76
PGSC0003DMT400035807	Potato	nucleus	38.52	59.57
GSMUA_Achr3P05070_001	Banana	nucleus	54.09	59.56
KRH19032	Soybean	nucleus	62.67	59.47
Solyc07g018290.2.1	Tomato	nucleus	52.3	55.98
KRH02858	Soybean	nucleus	63.07	54.77
VIT_00s0772g00020.t01	Wine grape	nucleus	39.32	43.01
CDY42263	Canola	nucleus	47.11	42.99
AT5G57390.1	Thale cress	nucleus	47.7	42.83
CDY47943	Canola	nucleus	46.91	42.34
Bra020444.1-P	Field mustard	nucleus	46.71	41.86
VIT_00s1291g00010.t01	Wine grape	nucleus	40.92	39.96
VIT_09s0002g01370.t01	Wine grape	nucleus	42.91	39.89
VIT_01s0026g01690.t01	Wine grape	nucleus	26.35	39.64
VIT_11s0037g00870.t01	Wine grape	plastid	27.35	39.48
VIT_06s0004g01800.t01	Wine grape	nucleus	42.71	38.91
VIT_09s0018g01650.t01	Wine grape	plastid	27.35	37.95
VIT_04s0023g00950.t01	Wine grape	nucleus	30.54	36.87
VIT_13s0047g00340.t01	Wine grape	plastid	25.15	33.96
VIT_14s0108g00050.t01	Wine grape	nucleus	26.55	32.92
VIT_18s0001g08610.t01	Wine grape	nucleus	42.52	31.6
VIT_07s0151g00440.t01	Wine grape	nucleus	41.92	30.97

Protein Annotations

EntrezGene:100259877	wikigene:100259877	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB44657	ProteinID:CCB44657.1	InterPro:DNA-bd_dom_sf	UniProt:F6GXH1	EMBL:FN594964
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100259877	wikigene:LOC100259877	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC71165	UniParc:UPI0001984395
ArrayExpress:VIT_11s0052g00840	EnsemblPlantsGene:VIT_11s0052g00840	EnsemblPlants:VIT_11s0052g00840.t01	unigene:Vvi.15870	RefSeq:XP_002268683	RefSeq:XP_002268683.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:18415752..18418607

Molecular Weight (calculated)

53870.1 Da

IEP (calculated)

8.654

GRAVY (calculated)

-0.537

Length

501 amino acids

Sequence
(BLAST)

001: MASNHNWLAF SLSNNSLPSD SSQLCLFEAL SASTHHNGGV DREQGFPDRG GSDLIGGPKL EDFLGGGGGG GGAGAGLDQF SAKTPAGLSD AEIYESELKT
101: IAASFLRGFS SEQSEAQKQL ALTPEPSPKK SVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR KGRQVYLGGY DKEEKAARAY DLAALKYWGP
201: TTTTNFPVSN YEKELENMKN MTRQEFVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF
301: DMSRYDVKSI ANSNLPIGGA ITTGKPKTSP SDSASDSGSR RSEEQVQVLS GPSNTLIFSK PLKQDHHQSV DYWSVLGYQA STLNSVVKNP ILESSFPFQT
401: SSNLTMDFST ASAGFLCNGG GYIQQQQSNS SSSTASSSNS IPYATPVNGL NSSTSYEVSG YNSWAAATAA AAAAAAAPSL HSFQAAKPSL SVFQTPIFGM
501: E

Best Arabidopsis Sequence Match ( AT5G57390.1 )
(BLAST)

001: MKNNNNKSSS SSSYDSSLSP SSSSSSHQNW LSFSLSNNNN NFNSSSNPNL TSSTSDHHHP HPSHLSLFQA FSTSPVERQD GSPGVSPSDA TAVLSVYPGG
101: PKLENFLGGG ASTTTTRPMQ QVQSLGGVVF SSDLQPPLHP PSAAEIYDSE LKSIAASFLG NYSGGHSSEV SSVHKQQPNP LAVSEASPTP KKNVESFGQR
201: TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW GPTTTTNFPI SNYESELEEM KHMTRQEFVA SLRRKSSGFS
301: RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISRYDVK SIASCNLPVG GLMPKPSPAT AAADKTVDLS
401: PSDSPSLTTP SLTFNVATPV NDHGGTFYHT GIPIKPDPAD HYWSNIFGFQ ANPKAEMRPL ANFGSDLHNP SPGYAIMPVM QEGENNFGGS FVGSDGYNNH
501: SAASNPVSAI PLSSTTTMSN GNEGYGGNIN WINNNISSSY QTAKSNLSVL HTPVFGLE

Arabidopsis Description

AIL5AP2-like ethylene-responsive transcription factor AIL5 [Source:UniProtKB/Swiss-Prot;Acc:Q6PQQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.