Factsheet for VIT_13s0047g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0813300-00	Rice	nucleus	22.64	66.14
GSMUA_Achr8P09350_001	Banana	plastid	44.47	45.58
Bra007066.1-P	Field mustard	plastid	49.87	44.9
Bra003178.1-P	Field mustard	plastid	49.87	44.79
CDX73488	Canola	nucleus	49.87	44.79
VIT_11s0037g00870.t01	Wine grape	plastid	41.51	44.38
CDX78230	Canola	plastid	49.6	44.34
CDX67595	Canola	plastid	49.6	44.23
AT3G54320.1	Thale cress	plastid	51.21	43.38
KRH13193	Soybean	nucleus	46.9	42.23
PGSC0003DMT400070735	Potato	nucleus	49.33	42.17
Solyc01g096860.1.1	Tomato	nucleus	49.87	41.76
VIT_09s0018g01650.t01	Wine grape	plastid	40.43	41.55
KRH44733	Soybean	nucleus	47.17	41.08
VIT_01s0026g01690.t01	Wine grape	nucleus	36.12	40.24
GSMUA_Achr3P03630_001	Banana	plastid	44.2	39.61
Zm00001d005016_P005	Maize	plastid	42.32	39.45
GSMUA_Achr3P09410_001	Banana	nucleus	36.93	38.27
Os12t0126300-00	Rice	nucleus	45.55	37.89
EES09182	Sorghum	nucleus	42.86	37.86
TraesCS5D01G150500.1	Wheat	plastid	43.13	37.47
TraesCS5A01G141700.1	Wheat	plastid	42.59	36.92
HORVU5Hr1G045290.10	Barley	nucleus, plastid	43.13	36.7
KXG33588	Sorghum	plastid	38.01	35.34
TraesCS4B01G136400.1	Wheat	plastid	31.0	34.85
VIT_14s0108g00050.t01	Wine grape	nucleus	37.2	34.16
Zm00001d052405_P002	Maize	plastid	37.74	32.18
TraesCS4D01G131200.1	Wheat	plastid	30.73	32.11
TraesCS4A01G181300.1	Wheat	plastid	31.0	31.86
TraesCS3D01G330400.1	Wheat	plastid	32.08	31.57
TraesCS3B01G368400.1	Wheat	plastid	32.34	31.17
Zm00001d043116_P002	Maize	nucleus	37.2	29.87
VIT_11s0052g00840.t01	Wine grape	nucleus	33.96	25.15
VIT_00s0772g00020.t01	Wine grape	nucleus	30.46	24.67
VIT_09s0002g01370.t01	Wine grape	nucleus	33.15	22.82
VIT_00s1291g00010.t01	Wine grape	nucleus	31.54	22.81
VIT_06s0004g01800.t01	Wine grape	nucleus	32.34	21.82
VIT_04s0023g00950.t01	Wine grape	nucleus	22.1	19.76
VIT_18s0001g08610.t01	Wine grape	nucleus	35.58	19.58
VIT_07s0151g00440.t01	Wine grape	nucleus	34.23	18.73

Protein Annotations

EntrezGene:100250488	wikigene:100250488	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB52183	ProteinID:CCB52183.1	InterPro:DNA-bd_dom_sf	UniProt:F6HIV8	EMBL:FN595767
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100250488	wikigene:LOC100250488	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00021090C8	ArrayExpress:VIT_13s0047g00340	EnsemblPlantsGene:VIT_13s0047g00340
EnsemblPlants:VIT_13s0047g00340.t01	RefSeq:XP_002272839	RefSeq:XP_002272839.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:-:16184802..16187800

Molecular Weight (calculated)

40791.8 Da

IEP (calculated)

5.334

GRAVY (calculated)

-0.864

Length

371 amino acids

Sequence
(BLAST)

001: MVKRSSPGSS SSPSSSSTSS DAASRPAPPS GGKPKSRKKE AKKNSNGNGS NSKNKRTSIY RGVTKHRWTG RFEAHLWDKS SWNDISNKRG RQGAYYNEEA
101: AARTYDLAAL KYWGPTTPLN FPLETYQKDA EEMEKMSKEE YLALLRRQSN GFSRGVSKHH HNGRWEARIG RVLGNKYLYL GTYSTQEEAA AAYDMAAIEY
201: RGLNAVTNFD ISNYVKLGRV EAQVQELAQQ LQPNTPIGPQ NELQKEEEEQ LQEPVLSSSQ HLPSMDSSAM EIMDPADDPD LPWNFCAYST LLVPDVPLGK
301: GGELSDLFYE KGFEDNIDYM FEGAAGNEEE SNSAENGVKE NGLSSSSSSS SGCDSASPAS TTTLASCTYS M

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.