CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0813300-00	Rice	nucleus	24.81	77.95
Zm00001d043116_P002	Maize	nucleus	83.71	72.29
TraesCS4B01G136400.1	Wheat	plastid	46.12	55.76
TraesCS3B01G368400.1	Wheat	plastid	50.63	52.47
TraesCS4A01G181300.1	Wheat	plastid	46.62	51.52
TraesCS4D01G131200.1	Wheat	plastid	45.36	50.99
TraesCS3D01G330400.1	Wheat	plastid	48.12	50.93
GSMUA_Achr3P09410_001	Banana	nucleus	34.84	38.83
VIT_13s0047g00340.t01	Wine grape	plastid	35.34	38.01
CDX73488	Canola	nucleus	37.34	36.08
CDX78230	Canola	plastid	37.09	35.66
Bra007066.1-P	Field mustard	plastid	36.59	35.44
OQU89519	Sorghum	plastid	34.59	34.94
EES09182	Sorghum	nucleus	36.59	34.76
KRH13193	Soybean	nucleus	35.84	34.71
CDX67595	Canola	plastid	36.09	34.62
AT3G54320.1	Thale cress	plastid	37.84	34.47
Bra003178.1-P	Field mustard	plastid	35.34	34.14
PGSC0003DMT400070735	Potato	nucleus	37.09	34.1
Solyc01g096860.1.1	Tomato	nucleus	37.34	33.63
KRH44733	Soybean	nucleus	35.34	33.1
EES19874	Sorghum	nucleus	34.59	31.15
OQU80549	Sorghum	nucleus	34.34	31.14
KXG39508	Sorghum	extracellular, nucleus	29.57	27.63
EER89186	Sorghum	nucleus	32.33	26.43
EER88761	Sorghum	nucleus	28.32	23.84
KXG27285	Sorghum	nucleus	28.07	22.95
OQU93137	Sorghum	nucleus	28.32	19.79
KXG39831	Sorghum	nucleus	30.08	19.45
EER93382	Sorghum	nucleus	29.82	18.36
KXG34322	Sorghum	nucleus	30.33	17.77
KXG30667	Sorghum	nucleus	30.08	17.39
KXG33917	Sorghum	nucleus	30.33	17.21

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1B6Q6N9	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KXG33588	ProteinID:KXG33588	ProteinID:KXG33588.1	PFAM:PF00847
PFscan:PS51032	PFscan:PS51257	PANTHER:PTHR32467	SMART:SM00380	EnsemblPlantsGene:SORBI_3003G332300	SUPFAM:SSF54171
UniParc:UPI00081AE3BA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:65676372..65680453

Molecular Weight (calculated)

43916.4 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.709

Length

399 amino acids

Sequence
(BLAST)

001: MTKPHSPSSW AASSLSCVSS SSASCDVPPP WSPKRSSKKQ RSSRRRAKNG AAVTPRRTSS IYRGVTRHRG TGKYEAHLWD KNAWSRTKNK KGRQVYLGAF
101: DNEEAAARTY DLAALKYWGS DSTLNFPLES YRHEHDKMQR MTREAYLATL RRKSSCFSRG ASGYRGVAKH HHNGRWEARI GYACGKKYLY LGTFGSQEEA
201: ARAYDLAALE LRGHAAVTNF DTSNYTHKDD QRRPEPAVQR KPALKPKDEP VDEAPPLPKA HHPVPTPPLL TPKAEPGYEL GEPLALPPGP VLRDADDVDH
301: AIAEILPALC MDPADFEARY PARRARALGG CPPDDQLLRG LALPDSVRFE DDIETLFDAP GGGTGEVQVQ LHAVVTDVSG VDADAAATIS SLASARWWP

Best Arabidopsis Sequence Match ( AT3G54320.1 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.