CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017207_P001	Maize	nucleus	93.91	95.86
Os02t0614300-01	Rice	mitochondrion, nucleus	39.71	85.36
TraesCS6B01G252000.1	Wheat	nucleus	78.55	81.87
HORVU6Hr1G057060.3	Barley	nucleus	76.96	81.44
TraesCS6D01G205300.1	Wheat	nucleus	77.83	81.24
TraesCS6A01G229500.1	Wheat	nucleus	77.54	81.18
Os04t0504500-01	Rice	nucleus	66.81	70.06
HORVU2Hr1G087310.1	Barley	nucleus	65.36	68.44
TraesCS2D01G357600.1	Wheat	nucleus	64.78	68.24
TraesCS2B01G378100.1	Wheat	nucleus	64.93	67.88
GSMUA_Achr2P05880_001	Banana	nucleus	45.8	55.24
CDY68782	Canola	nucleus	25.51	54.32
CDY72251	Canola	nucleus	24.35	51.53
CDY72154	Canola	nucleus	24.35	51.06
EER88761	Sorghum	nucleus	32.9	47.89
VIT_06s0004g01800.t01	Wine grape	nucleus	37.54	47.09
KRH24688	Soybean	nucleus	37.39	46.65
Solyc11g061750.1.1	Tomato	nucleus	36.38	45.8
PGSC0003DMT400035354	Potato	nucleus	36.38	45.55
Bra031234.1-P	Field mustard	nucleus	35.51	43.99
CDY06387	Canola	nucleus	35.51	43.75
CDY57915	Canola	nucleus	35.51	43.44
Bra018899.1-P	Field mustard	nucleus	34.78	42.93
AT3G20840.1	Thale cress	nucleus	35.65	42.86
AT1G51190.1	Thale cress	nucleus	35.07	42.61
KRH29690	Soybean	nucleus	36.81	42.47
CDY29623	Canola	nucleus	34.49	42.35
Bra030451.1-P	Field mustard	nucleus	34.49	42.2
CDY35571	Canola	nucleus	34.2	41.92
CDY19597	Canola	nucleus	35.65	41.84
KXG33917	Sorghum	nucleus	42.32	41.54
KXG39508	Sorghum	extracellular, nucleus	25.65	41.45
KXG27285	Sorghum	nucleus	28.99	40.98
OQU93137	Sorghum	nucleus	31.01	37.48
KXG39831	Sorghum	nucleus	31.16	34.85
OQU89519	Sorghum	plastid	19.86	34.68
Bra023921.1-P	Field mustard	nucleus	23.04	34.05
EER93382	Sorghum	nucleus	31.88	33.95
KXG34322	Sorghum	nucleus	32.17	32.6
OQU80549	Sorghum	nucleus	20.43	32.05
EES19874	Sorghum	nucleus	20.0	31.15
EES09182	Sorghum	nucleus	18.84	30.95
KXG33588	Sorghum	plastid	17.39	30.08
EER89186	Sorghum	nucleus	20.0	28.28

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A194YR45	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KXG30667	ProteinID:KXG30667	ProteinID:KXG30667.2	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380	EnsemblPlantsGene:SORBI_3004G214300
SUPFAM:SSF54171	UniParc:UPI0003C6942B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:56403997..56408559

Molecular Weight (calculated)

72579.0 Da

IEP (calculated)

6.436

GRAVY (calculated)

-0.590

Length

690 amino acids

Sequence
(BLAST)

001: MASTNNHWLG FSLSGQDNPQ PNHQDSSPAA AGIDISGASD FYGLPTQQGS DGNLGVPGLR DDHASYGIME AFNRVPQETQ DWNMRGLDYN GGGSELSMLV
101: GSSGGGGGGG KRAVEDSEPK LEDFLGGNSF VSEHDQSGGY LFSGVPMASS TNSNSGSNTM ELSMIKTWLR NNQVPQPQPP AAPHQAPQTE EMSTDANASA
201: SSFGCSDSMG RNGTVAAAGS SQSLALSMST GSHLPMVVAG GGASGAASES TSSENKRASG AMDSPGSAVE AVPRKSIDTF GQRTSIYRGV TRHRWTGRYE
301: AHLWDNSCRR EGQSRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI SNYEKELEEM KHMTRQEYIA YLRRNSSGFS RGASKYRGVT RHHQHGRWQA
401: RIGRVAGNKD LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVK SILESSTLPV GGAARRLKDA VDHVEAGATI WRADMDGGVI SQLAEAGMGG
501: YASYGHHAWP TIAFQQPSPL SVHYPYGQPP SRGWCKPEQD AAVAAAAHSL QDLQQLHLGS AAHNFFQASS SSAVYNSGGG GASGGYHQGL GGGSSSFLMP
601: SSTVVAGADQ GHSSSTANQG STCSYGDDHQ EGKLIGYDAM VAATAAGGDP YAAARSGYQF SSQGSGSTVS IARANGYSNN WSSPFNGGMG

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.