Factsheet for PGSC0003DMT400035354

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029235
PGSC0003DMT400089342

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51190.1	PGSC0003DMT400029235	AT1G16490.1	21245844
AT1G51190.1	PGSC0003DMT400089342	AT1G16490.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g061750.1.1	Tomato	nucleus	97.64	98.18
VIT_06s0004g01800.t01	Wine grape	nucleus	71.51	71.64
CDY72154	Canola	nucleus	42.29	70.82
CDY72251	Canola	nucleus	41.56	70.25
KRH24688	Soybean	nucleus	70.42	70.16
Bra018899.1-P	Field mustard	nucleus	68.97	67.98
CDY68782	Canola	nucleus	39.75	67.59
AT1G51190.1	Thale cress	nucleus	69.51	67.43
CDY35571	Canola	nucleus	68.78	67.32
CDY29623	Canola	nucleus	68.6	67.26
Bra030451.1-P	Field mustard	nucleus	68.42	66.84
Bra031234.1-P	Field mustard	nucleus	66.06	65.35
KRH29690	Soybean	nucleus	70.6	65.05
CDY57915	Canola	nucleus	66.42	64.89
AT3G20840.1	Thale cress	nucleus	67.51	64.81
CDY06387	Canola	nucleus	65.34	64.29
CDY19597	Canola	nucleus	66.24	62.07
Bra023921.1-P	Field mustard	nucleus	50.09	59.1
PGSC0003DMT400041758	Potato	nucleus	24.86	52.49
PGSC0003DMT400035807	Potato	nucleus	26.68	45.37
PGSC0003DMT400055210	Potato	nucleus	22.69	43.71
PGSC0003DMT400041881	Potato	nucleus	40.47	43.55
GSMUA_Achr2P05880_001	Banana	nucleus	43.19	41.61
Os02t0614300-01	Rice	mitochondrion, nucleus	22.5	38.63
HORVU6Hr1G057060.3	Barley	nucleus	44.1	37.27
Zm00001d017207_P001	Maize	nucleus	45.19	36.83
TraesCS6A01G229500.1	Wheat	nucleus	43.74	36.57
TraesCS6D01G205300.1	Wheat	nucleus	43.74	36.46
KXG30667	Sorghum	nucleus	45.55	36.38
TraesCS2D01G357600.1	Wheat	nucleus	43.19	36.34
TraesCS6B01G252000.1	Wheat	nucleus	43.56	36.25
TraesCS2B01G378100.1	Wheat	nucleus	43.38	36.21
HORVU2Hr1G087310.1	Barley	nucleus	43.19	36.12
Os04t0504500-01	Rice	nucleus	43.01	36.02
PGSC0003DMT400087745	Potato	nucleus	17.24	32.31
PGSC0003DMT400006170	Potato	nucleus	23.59	32.02
PGSC0003DMT400037835	Potato	nucleus	30.13	31.8
PGSC0003DMT400012588	Potato	nucleus	37.02	31.24
PGSC0003DMT400070735	Potato	nucleus	24.14	30.65

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1B265	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400013587	PGSC:PGSC0003DMG400013587	EnsemblPlants:PGSC0003DMT400035354
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000295664D	SEG:seg	:	:	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013587]

Coordinates

chr11:+:34012292..34016037

Molecular Weight (calculated)

60890.8 Da

IEP (calculated)

6.464

GRAVY (calculated)

-0.797

Length

551 amino acids

Sequence
(BLAST)

001: MNSNNWLSFP LSPTHSSLPP HLQNDQSHHF SLGLVNETID NPFQNQEWNL MNTQGSNEVP KVADFLGMNK SENQSELIPY NEIQANDSDY LFQNNHLMPS
101: MQNALAPPPT SNYDLQENAC NIQSLTLSMG SGKGSTSETS ASPSATAATA SASAENSNNT SIVEAAPRRT LDTFGQRTSI YRGVTRHRWT GRYEAHLWDN
201: SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE CEDMKHMTRQ EFVAAIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA
301: GNKDLYLGTF TTEEEAAEAY DIAAIKFRGL NAVTNFDMNR YDVKAILESN TLPIGGGAAK RLKEAQALES SRKRDQEMMA LNSSFQYGNS NPLQAYPLMQ
401: QQPSFDNSQP LLTLQNHDIS QYNIQDSSSH FHQSYLQTQL QLQNNSHQVL YNNYLQNNQV FLHGLMNNNE GSSSGSYSTG GYFGNSPGLG GMSSNSTSGN
501: NGGGGGGSGS VAHEEVALVK VDYDNIPSYN GWSGESSVQG SNPGVFSMWN E

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.