Factsheet for PGSC0003DMT400006170

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076380.1.1	Tomato	nucleus	91.38	85.29
VIT_14s0108g00050.t01	Wine grape	nucleus	54.93	55.2
KRH40131	Soybean	nucleus	52.96	54.85
KRH01131	Soybean	nucleus	52.46	54.34
Os06t0145700-00	Rice	nucleus	39.16	49.38
TraesCS7A01G095100.1	Wheat	nucleus	46.8	46.57
TraesCS4A01G395400.1	Wheat	nucleus	46.55	46.21
TraesCS7D01G091100.1	Wheat	nucleus	46.55	46.1
HORVU1Hr1G080350.3	Barley	nucleus	45.07	45.19
TraesCS1D01G362500.1	Wheat	nucleus	45.32	44.77
Zm00001d011134_P001	Maize	nucleus	46.31	44.76
Os05t0536250-00	Rice	nucleus	47.29	44.55
TraesCS1A01G357800.1	Wheat	nucleus	45.07	44.31
EES19874	Sorghum	nucleus	46.31	42.44
PGSC0003DMT400087745	Potato	nucleus	30.54	42.18
Zm00001d045378_P001	Maize	nucleus	47.04	38.9
EER89186	Sorghum	nucleus	46.55	38.73
PGSC0003DMT400041758	Potato	nucleus	24.38	37.93
PGSC0003DMT400070735	Potato	nucleus	36.45	34.1
PGSC0003DMT400055210	Potato	nucleus	22.66	32.17
PGSC0003DMT400035807	Potato	nucleus	24.88	31.17
PGSC0003DMT400041881	Potato	nucleus	33.99	26.95
PGSC0003DMT400035354	Potato	nucleus	32.02	23.59
PGSC0003DMT400037835	Potato	nucleus	28.08	21.84
PGSC0003DMT400012588	Potato	nucleus	32.76	20.37

Protein Annotations

MapMan:15.5.7.3	MapMan:26.9.2.2	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0ZQY3	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400002399	PGSC:PGSC0003DMG400002399
EnsemblPlants:PGSC0003DMT400006170	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF73	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00029533A3	SEG:seg	:	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002399]

Coordinates

chr8:-:48967392..48969332

Molecular Weight (calculated)

46698.4 Da

IEP (calculated)

9.103

GRAVY (calculated)

-0.901

Length

406 amino acids

Sequence
(BLAST)

001: MNAISVKCEK LSPGNRRSLC MVDYDIPVNN KCVKRRRKSP VAAVIVNDNN NNGQKLDSSK VDQSSSIVQT RTVKRSSRFR GVSRHRWTGR YEAHLWDKAS
101: WNVTQKKKGK QVYLGAYDEE ESAARAYDLA AIKYWGTTTF TNFPISDYEK EIEIMQNMTK EEHLASLRRR SSGFARGVSK YRGVARHHHN NRWEARIGRV
201: FGNKYLYLGT YNTQEEAARA YDIAAIEYRG TNAMTNFDMN TYIRWLKPDA NSLMQFQDLT SEDQPIQTSN TNDMINPLHD SSYSFNHNHF TTTTNTEKLY
301: AIPRSQEPIE RKMPLSYCRK SSSPTALSLL LRSSMFQELV EKNSSTDSEE SEENNMKHGA QSNRENDFLF YTNDKLPKLE SLENGTTSSS ALCDREGQQY
401: FGIDES

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.