Factsheet for Os05t0536250-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011134_P001	Maize	nucleus	71.0	72.86
Os01t0813300-00	Rice	nucleus	21.35	72.44
EES19874	Sorghum	nucleus	72.85	70.88
Os03t0176300-00	Rice	mitochondrion	27.61	70.0
HORVU1Hr1G080350.3	Barley	nucleus	62.18	66.17
TraesCS1A01G357800.1	Wheat	nucleus	62.88	65.62
TraesCS1D01G362500.1	Wheat	nucleus	62.41	65.45
Os06t0145700-00	Rice	nucleus	39.91	53.42
KRH01131	Soybean	nucleus	47.33	52.04
VIT_14s0108g00050.t01	Wine grape	nucleus	48.03	51.24
KRH40131	Soybean	nucleus	46.4	51.02
Solyc06g066390.1.1	Tomato	nucleus	44.78	47.65
PGSC0003DMT400006170	Potato	nucleus	44.55	47.29
Os09t0423800-01	Rice	nucleus	39.21	46.3
Solyc08g076380.1.1	Tomato	nucleus	44.32	43.91
Os08t0442400-01	Rice	nucleus	36.19	37.23
Os12t0126300-00	Rice	nucleus	35.96	34.75
Os07t0124700-01	Rice	nucleus	25.75	33.53
Os06t0657500-02	Rice	nucleus	32.25	29.64
Os03t0313100-01	Rice	extracellular, nucleus	28.07	28.07
Os04t0653600-01	Rice	nucleus	30.16	26.26
Os11t0295900-01	Rice	nucleus	31.09	23.97
Os02t0614300-01	Rice	mitochondrion, nucleus	17.17	23.05
Os04t0504500-01	Rice	nucleus	32.02	20.97
Os03t0232200-01	Rice	nucleus	30.86	20.72
Os01t0899800-01	Rice	nucleus	31.79	19.71
Os03t0770700-01	Rice	plastid	7.89	10.03

Protein Annotations

MapMan:15.5.7.3	MapMan:26.9.2.2	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EMBL:AY685112	ProteinID:BAS95082.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlantsGene:Os05g0536250	EnsemblPlants:Os05t0536250-00
PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF10	UniProt:Q2TQ39	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0000679B02	SEG:seg	:	:	:

Description

APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN 52Similar to AP2 domain-containing transcription factor. (Os05t0536250-00)

Coordinates

chr5:-:26631889..26633757

Molecular Weight (calculated)

47686.0 Da

IEP (calculated)

8.282

GRAVY (calculated)

-0.623

Length

431 amino acids

Sequence
(BLAST)

001: MDHSIMMVKN EIENYSGSSP AMIINALEGG AEAGPVVRRR RREPSLLAPI NGDGDTNGGG IGKSSLSGIT VKRSSRFRGV SRFRACRDDK KMLSCRHRWT
101: GRFEAHLWDK NSWNPTQRKK GKQVYLGAYD EEEAAARAYD LAALKYWGPT TYTNFPVMDY EKELKIMENL TKEEYLASLR RKSSGFSRGV SKYRGVARHH
201: QNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY KGVNAVTNFD LRSYITWLKP TPAHVAMNPA EALAMQIPVD HFLPMETQMM MLPQSNPFTS
301: YHNAQSLGGG DGGSSSTNNQ EASMIISPSG SSRKRSSSTA LSLLLKSSMF RQLVEKNSDA GEENGGEMRE PGAHPGEGYE YHNFFQGDAA PDMDMCDLLS
401: SGNVHAASGS AGFEEDIACY SGFGSMQSLQ Q

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.