Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006170 | Potato | nucleus | 85.29 | 91.38 |
| Solyc06g066390.1.1 | Tomato | nucleus | 58.62 | 62.96 |
| VIT_14s0108g00050.t01 | Wine grape | nucleus | 51.49 | 55.45 |
| KRH40131 | Soybean | nucleus | 48.74 | 54.08 |
| KRH01131 | Soybean | nucleus | 48.05 | 53.32 |
| Os06t0145700-00 | Rice | nucleus | 37.01 | 50.0 |
| TraesCS7A01G095100.1 | Wheat | nucleus | 43.22 | 46.08 |
| TraesCS4A01G395400.1 | Wheat | nucleus | 42.99 | 45.72 |
| TraesCS7D01G091100.1 | Wheat | nucleus | 42.99 | 45.61 |
| Solyc12g010490.1.1 | Tomato | plastid | 37.24 | 44.51 |
| HORVU1Hr1G080350.3 | Barley | nucleus | 41.38 | 44.44 |
| Os05t0536250-00 | Rice | nucleus | 43.91 | 44.32 |
| Zm00001d011134_P001 | Maize | nucleus | 42.76 | 44.29 |
| TraesCS1D01G362500.1 | Wheat | nucleus | 41.61 | 44.04 |
| TraesCS1A01G357800.1 | Wheat | nucleus | 41.38 | 43.58 |
| Solyc06g068570.2.1 | Tomato | nucleus | 30.8 | 42.54 |
| EES19874 | Sorghum | nucleus | 42.99 | 42.21 |
| Solyc03g117720.2.1 | Tomato | nucleus, plastid | 35.63 | 41.78 |
| EER89186 | Sorghum | nucleus | 43.68 | 38.93 |
| Zm00001d045378_P001 | Maize | nucleus | 42.99 | 38.09 |
| Solyc01g096860.1.1 | Tomato | nucleus | 35.17 | 34.54 |
| Solyc07g018290.2.1 | Tomato | nucleus | 28.28 | 26.28 |
| Solyc05g051380.2.1 | Tomato | nucleus | 28.74 | 24.95 |
| Solyc11g061750.1.1 | Tomato | nucleus | 29.2 | 23.18 |
| Solyc11g010710.1.1 | Tomato | nucleus | 28.74 | 23.02 |
| Solyc11g008560.1.1 | Tomato | nucleus | 32.41 | 20.83 |
| Solyc02g092050.2.1 | Tomato | nucleus | 30.57 | 20.59 |
| Solyc04g077490.2.1 | Tomato | nucleus | 29.43 | 19.63 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | UniProt:K4CN01 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF73 |
| SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc08g076380.1 | EnsemblPlants:Solyc08g076380.1.1 | UniParc:UPI000276BCD2 | SEG:seg |
Description
No Description!
Coordinates
chr8:-:60355707..60357672
Molecular Weight (calculated)
50040.0 Da
IEP (calculated)
9.617
GRAVY (calculated)
-0.696
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAISVKCEK LSPGNRRSLC MVDYDIPVNN KCIKRRRKSP ATVVTVNDNS QKLDSSKVDQ SNSIVQTPTV KRSSRFRGVS RHRWTGRYEA HLWDKASWNV
101: TQKKKGKQVY LASYLCYVLG AYDEEESAAR AYDLAAIKYW GTTTFTNFPI SDYEKEIEIM QSMTKEEHLA SLRRRSSGFA RGVSKYRGVA RHHHNNRWEA
201: RIGRVFGNKY LYLGTYSKCF SRPLTNFIQI KNAFKLILTR NIFLTILFSI DTQEEAARAY DIAAIEYRGT NAMTNFDMNT YIRWLKPNNT NSLMQFQDLT
301: SEDQPIQISN TNDMINPIHD SSYSFNHNHF TTITTNTEKL YAIPRSQEPI ERKMPLSYCK KSSSPTALSL LLRSSMFQEL VEKNSSTDSE ESEENNMKHG
401: AQSNRENEFL FCTNDKLPKL ESWENGTTSS SASLG
101: TQKKKGKQVY LASYLCYVLG AYDEEESAAR AYDLAAIKYW GTTTFTNFPI SDYEKEIEIM QSMTKEEHLA SLRRRSSGFA RGVSKYRGVA RHHHNNRWEA
201: RIGRVFGNKY LYLGTYSKCF SRPLTNFIQI KNAFKLILTR NIFLTILFSI DTQEEAARAY DIAAIEYRGT NAMTNFDMNT YIRWLKPNNT NSLMQFQDLT
301: SEDQPIQISN TNDMINPIHD SSYSFNHNHF TTITTNTEKL YAIPRSQEPI ERKMPLSYCK KSSSPTALSL LLRSSMFQEL VEKNSSTDSE ESEENNMKHG
401: AQSNRENEFL FCTNDKLPKL ESWENGTTSS SASLG
001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE
Arabidopsis Description
WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.