Factsheet for Solyc12g010490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400087745	Potato	nucleus	73.9	91.5
VIT_11s0037g00870.t01	Wine grape	plastid	67.03	70.32
KRH55024	Soybean	plastid	64.01	66.38
KRH63091	Soybean	plastid	62.91	65.99
Solyc03g117720.2.1	Tomato	nucleus, plastid	62.09	60.92
Solyc06g068570.2.1	Tomato	nucleus	52.47	60.63
KRH72352	Soybean	nucleus	60.71	60.55
KRH02994	Soybean	nucleus	61.26	60.27
Os09t0423800-01	Rice	nucleus	57.69	57.53
GSMUA_Achr5P04670_001	Banana	nucleus	53.85	54.44
TraesCS5D01G229400.1	Wheat	nucleus	57.97	53.28
TraesCS5A01G221600.1	Wheat	nucleus	57.97	53.28
TraesCS5B01G220400.2	Wheat	nucleus	57.42	52.64
OQU89519	Sorghum	plastid	56.59	52.15
Zm00001d020540_P002	Maize	plastid	58.52	51.82
TraesCS6B01G153800.1	Wheat	nucleus	45.88	49.55
Os08t0442400-01	Rice	nucleus	52.2	45.35
TraesCS6A01G125700.1	Wheat	nucleus	41.76	43.55
Zm00001d032144_P001	Maize	nucleus	46.7	41.98
Solyc06g066390.1.1	Tomato	nucleus	43.96	39.51
OQU80549	Sorghum	nucleus	47.53	39.32
Solyc08g076380.1.1	Tomato	nucleus	44.51	37.24
Solyc01g096860.1.1	Tomato	nucleus	44.23	36.34
Solyc07g018290.2.1	Tomato	nucleus	37.09	28.85
Solyc05g051380.2.1	Tomato	nucleus	35.99	26.15
Solyc11g010710.1.1	Tomato	nucleus	35.99	24.13
Solyc11g061750.1.1	Tomato	nucleus	35.16	23.36
Solyc04g077490.2.1	Tomato	nucleus	38.46	21.47
Solyc02g092050.2.1	Tomato	nucleus	37.91	21.36
Solyc11g008560.1.1	Tomato	nucleus	37.91	20.38

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4DCD6	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF68	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc12g010490.1	EnsemblPlants:Solyc12g010490.1.1	UniParc:UPI0002769E61
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3501040..3504574

Molecular Weight (calculated)

41141.9 Da

IEP (calculated)

7.735

GRAVY (calculated)

-0.769

Length

364 amino acids

Sequence
(BLAST)

001: MGKLSQQNQI RNNLSTNNGN NIIGSIVKVK RTRKTVPRDS PPQRSSIYRG VTRHRWTGRY EAHLWDKNCW NESQNKKGRQ GAYDDEGTAA HAYDLAALKY
101: WGSETILNFP VSTYEKEIIE MENQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ EEAATAYDMA AIEYRGLNAV
201: TNFDLSRYIK WLKPNKNNQS NPNVETNMIP TPNHSIGSTT IVTTTSSSTA LVYPDSQLTT NTSISDVSIS QINRPSSATS ALGLLLQSTK FKEMMEMTLA
301: AECPPAPIEL PDPDPPQSSN FPEDIKTYFD TQEFGNFGHE QGEDLVFNEI NSLMQPHLQF DYDA

Best Arabidopsis Sequence Match ( AT1G16060.1 )
(BLAST)

001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.