Factsheet for VIT_11s0037g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55024	Soybean	plastid	76.08	75.21
KRH63091	Soybean	plastid	74.93	74.93
VIT_09s0018g01650.t01	Wine grape	plastid	74.35	71.47
Solyc12g010490.1.1	Tomato	plastid	70.32	67.03
KRH02994	Soybean	nucleus	71.47	67.03
KRH72352	Soybean	nucleus	70.32	66.85
PGSC0003DMT400087745	Potato	nucleus	51.87	61.22
Os09t0423800-01	Rice	nucleus	62.25	59.18
GSMUA_Achr5P04670_001	Banana	nucleus	58.5	56.39
TraesCS5D01G229400.1	Wheat	nucleus	62.82	55.05
TraesCS5B01G220400.2	Wheat	nucleus	62.82	54.91
TraesCS5A01G221600.1	Wheat	nucleus	62.54	54.8
Zm00001d020540_P002	Maize	plastid	63.4	53.53
OQU89519	Sorghum	plastid	60.52	53.16
TraesCS6B01G153800.1	Wheat	nucleus	50.72	52.23
Os08t0442400-01	Rice	nucleus	59.08	48.93
TraesCS6A01G125700.1	Wheat	nucleus	46.97	46.7
VIT_01s0026g01690.t01	Wine grape	nucleus	44.38	46.25
Zm00001d032144_P001	Maize	nucleus	52.74	45.19
OQU80549	Sorghum	nucleus	53.31	42.05
VIT_13s0047g00340.t01	Wine grape	plastid	44.38	41.51
VIT_14s0108g00050.t01	Wine grape	nucleus	47.84	41.09
VIT_00s0772g00020.t01	Wine grape	nucleus	36.6	27.73
VIT_11s0052g00840.t01	Wine grape	nucleus	39.48	27.35
VIT_00s1291g00010.t01	Wine grape	nucleus	38.33	25.93
VIT_06s0004g01800.t01	Wine grape	nucleus	39.48	24.91
VIT_09s0002g01370.t01	Wine grape	nucleus	38.04	24.49
VIT_04s0023g00950.t01	Wine grape	nucleus	26.22	21.93
VIT_18s0001g08610.t01	Wine grape	nucleus	42.07	21.66
VIT_07s0151g00440.t01	Wine grape	nucleus	39.77	20.35

Protein Annotations

EntrezGene:100255268	wikigene:100255268	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB59790	ProteinID:CCB59790.1	InterPro:DNA-bd_dom_sf	UniProt:F6HYM6	EMBL:FN596499
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100255268	wikigene:LOC100255268	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF68	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002108314	ArrayExpress:VIT_11s0037g00870
EnsemblPlantsGene:VIT_11s0037g00870	EnsemblPlants:VIT_11s0037g00870.t01	RefSeq:XP_002273046	RefSeq:XP_002273046.2	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:9496570..9499281

Molecular Weight (calculated)

39352.7 Da

IEP (calculated)

7.599

GRAVY (calculated)

-0.835

Length

347 amino acids

Sequence
(BLAST)

001: MAKLSQQNHK NSANSNATNT TLSVTKVKRT RKTVPRDSPP QRSSIYRGVT RHRWTGRYEA HLWDKNCWNE SQNKKGRQGA YHDEEAAAHA YDLAALKYWG
101: PETILNFPLS TYEKELKEME GLSREEYIGS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AATAYDMAAI EYRGLNAVTN
201: FDLSRYIKWL KPNQNNPCEQ PNNPNLDSNL TPNPNHDFGI SFLNHPQTSG TAACSEPPLT QTRPPIASSA LGLLLQSSKF KEMMEMTTAA DHLSTPPESE
301: LPRCSFPDDI QTYFECQDSG SYEEGDDVIF SELNSFIPPM FQCDFSA

Best Arabidopsis Sequence Match ( AT1G16060.1 )
(BLAST)

001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.