Factsheet for VIT_00s0772g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1291g00010.t01	Wine grape	nucleus	99.78	89.08
PGSC0003DMT400041758	Potato	nucleus	41.7	73.18
CDX97022	Canola	nucleus	57.64	64.55
KRH74476	Soybean	nucleus	69.43	62.35
KRH39470	Soybean	nucleus	69.21	61.91
CDX78387	Canola	nucleus	52.84	60.2
Solyc05g051380.2.1	Tomato	nucleus	62.88	57.48
Solyc11g010710.1.1	Tomato	nucleus	65.94	55.62
Bra024394.1-P	Field mustard	nucleus	54.37	55.46
Bra028584.1-P	Field mustard	nucleus	67.9	55.24
CDY14577	Canola	nucleus	54.59	55.07
Bra006065.1-P	Field mustard	nucleus	66.81	55.04
CDY40102	Canola	nucleus	66.38	54.58
AT5G65510.2	Thale cress	nucleus	58.73	54.02
CDX69826	Canola	nucleus	65.94	53.93
Bra009026.1-P	Field mustard	nucleus	66.16	52.79
CDX85757	Canola	nucleus	66.59	52.68
AT5G10510.3	Thale cress	nucleus	68.78	52.15
GSMUA_Achr1P24940_001	Banana	nucleus	36.03	48.96
CDY08784	Canola	nucleus	54.15	48.53
HORVU4Hr1G052880.2	Barley	nucleus	22.05	47.42
TraesCS4B01G180600.1	Wheat	nucleus	36.03	44.0
TraesCS4D01G182100.1	Wheat	nucleus	36.03	43.88
TraesCS4A01G123800.1	Wheat	nucleus	35.81	43.39
Os03t0313100-01	Rice	extracellular, nucleus	37.99	40.37
KXG39508	Sorghum	extracellular, nucleus	36.9	39.58
VIT_11s0052g00840.t01	Wine grape	nucleus	43.01	39.32
Zm00001d028919_P001	Maize	extracellular, nucleus	36.24	39.06
VIT_01s0026g01690.t01	Wine grape	nucleus	27.73	38.14
VIT_06s0004g01800.t01	Wine grape	nucleus	44.76	37.27
VIT_11s0037g00870.t01	Wine grape	plastid	27.73	36.6
VIT_09s0018g01650.t01	Wine grape	plastid	27.95	35.46
VIT_09s0002g01370.t01	Wine grape	nucleus	41.48	35.25
VIT_04s0023g00950.t01	Wine grape	nucleus	30.79	33.98
VIT_14s0108g00050.t01	Wine grape	nucleus	29.04	32.92
GSMUA_Achr11P...	Banana	nucleus	38.21	31.7
PGSC0003DMT400037835	Potato	nucleus	35.81	31.42
VIT_13s0047g00340.t01	Wine grape	plastid	24.67	30.46
VIT_18s0001g08610.t01	Wine grape	nucleus	42.14	28.64
VIT_07s0151g00440.t01	Wine grape	nucleus	41.7	28.17

Protein Annotations

EntrezGene:100852973	wikigene:100852973	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB45321	ProteinID:CCB45321.1	InterPro:DNA-bd_dom_sf	UniProt:F6GZD5	EMBL:FN595025
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100852973	wikigene:LOC100852973	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF33	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002108C7C	ArrayExpress:VIT_00s0772g00020
EnsemblPlantsGene:VIT_00s0772g00020	EnsemblPlants:VIT_00s0772g00020.t01	RefSeq:XP_003635476	RefSeq:XP_003635476.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:35248254..35252282

Molecular Weight (calculated)

50105.8 Da

IEP (calculated)

6.615

GRAVY (calculated)

-0.573

Length

458 amino acids

Sequence
(BLAST)

001: MYTEGDDYQV KEAATPSITN SSMLTSFVDP QLHHQQVPKL EDFLGGDSSS LVRYSESQTE TQDSSLTHIY DHGSAYFNEQ QDLKAIAATA GFQAFSTNSG
101: SEVEDSSSIG RTQLASSDFP GHSIESGNEL AFSHCPTGAL SLGVTTTTTT TQRSDQQAIV SADSECSKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN
201: SSRREGQARK GRQGGYDKEE KAARAYDLAA LKYWGASATT NFPVSNYTKE LEEMKHVTKQ EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA
301: GNKDLYLGTF ATEEEAAEAY DIAAIKFRGV NAVTNFEMNR YDVEAIANSA LPIGGAAKRL KLSLESDQKP CLNLDQQTQS SASSSGITFG AIQPIPAIPC
401: GIPLDTATAF YHHNLFNHLH SSNMGASNSP GTTSSSMPTP MALLPPPAEF FIWPHQSY

Best Arabidopsis Sequence Match ( AT5G10510.2 )
(BLAST)

001: MYFLRHETQS WSNQKPQEFF KEEAQLAAAA SMADSTILTT FVDPQSHHSQ NHIPKLEDFL GDSSSIVRYS DNSQTDTQDS SLTQIYDPRH HHNQTGFYSD
101: HHDFKTMAGF QSAFSTNSGS EVDDSASIGR THLAGDYLGH VVESSGPELG FHGGSTGALS LGVNVNNNTN HRNDNDNHYR GNNNGERINN NNNNDNEKTD
201: SEKEKAVVAV ETSDCSNKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQGGYDKED KAARAYDLAA LKYWNATATT NFPITNYSKE
301: VEEMKHMTKQ EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY DIAAIKFRGI NAVTNFEMNR YDVEAIMKSA
401: LPIGGAAKRL KLSLEAAASS EQKPILGHHQ LHHFQQQQQQ QQLQLQSSPN HSSINFALCP NSAVQSQQII PCGIPFEAAA LYHHHQQQQQ HQQQQQQQNF
501: FQHFPANAAS DSTGSNNNSN VQGTMGLMAP NPAEFFLWPN QSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.