Factsheet for GSMUA_Achr1P24940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041758	Potato	nucleus	40.06	51.72
HORVU4Hr1G052880.2	Barley	nucleus	27.89	44.13
GSMUA_Achr8P26510_001	Banana	nucleus	43.03	42.9
GSMUA_Achr11P...	Banana	nucleus	70.03	42.75
TraesCS4D01G182100.1	Wheat	nucleus	47.48	42.55
TraesCS4B01G180600.1	Wheat	nucleus	47.18	42.4
TraesCS4A01G123800.1	Wheat	nucleus	47.18	42.06
CDX78387	Canola	nucleus	48.96	41.04
CDX97022	Canola	nucleus	48.96	40.34
GSMUA_AchrUn_...	Banana	nucleus	46.88	39.9
Os03t0313100-01	Rice	extracellular, nucleus	49.55	38.75
KRG99477	Soybean	nucleus	49.55	38.04
CDY14577	Canola	nucleus	49.85	37.0
KXG39508	Sorghum	extracellular, nucleus	46.88	37.0
Bra024394.1-P	Field mustard	nucleus	49.26	36.97
Zm00001d028919_P001	Maize	extracellular, nucleus	46.59	36.94
KRH45549	Soybean	nucleus	48.96	36.91
VIT_00s0772g00020.t01	Wine grape	nucleus	48.96	36.03
GSMUA_Achr9P13660_001	Banana	nucleus	46.29	35.78
AT5G65510.2	Thale cress	nucleus	50.74	34.34
GSMUA_Achr3P05070_001	Banana	nucleus	45.99	34.07
GSMUA_Achr4P32280_001	Banana	nucleus	42.43	33.81
GSMUA_Achr8P09350_001	Banana	plastid	36.2	33.7
GSMUA_AchrUn_...	Banana	nucleus	46.59	33.48
KRH74476	Soybean	nucleus	50.45	33.33
KRH39470	Soybean	nucleus	50.45	33.2
CDY08784	Canola	nucleus	49.85	32.88
VIT_00s1291g00010.t01	Wine grape	nucleus	49.85	32.75
Solyc05g051380.2.1	Tomato	nucleus	48.37	32.53
GSMUA_Achr5P04670_001	Banana	nucleus	34.42	32.22
Solyc11g010710.1.1	Tomato	nucleus	51.63	32.04
GSMUA_Achr3P03630_001	Banana	plastid	38.28	31.16
GSMUA_Achr3P09410_001	Banana	nucleus	32.94	31.01
CDX69826	Canola	nucleus	50.45	30.36
CDY40102	Canola	nucleus	49.85	30.16
Bra006065.1-P	Field mustard	nucleus	49.26	29.86
Bra028584.1-P	Field mustard	nucleus	49.85	29.84
Bra009026.1-P	Field mustard	nucleus	49.55	29.09
CDX85757	Canola	nucleus	49.55	28.84
GSMUA_Achr5P25620_001	Banana	nucleus	46.29	28.68
GSMUA_Achr8P09110_001	Banana	nucleus	49.55	28.11
GSMUA_Achr2P05880_001	Banana	nucleus	47.48	27.97
GSMUA_Achr1P12410_001	Banana	nucleus	45.7	27.95
GSMUA_Achr3P15150_001	Banana	nucleus	45.7	27.95
AT5G10510.3	Thale cress	nucleus	49.85	27.81
GSMUA_Achr7P00740_001	Banana	nucleus	44.51	27.73
GSMUA_Achr1P21950_001	Banana	nucleus	46.29	27.71
GSMUA_Achr3P21460_001	Banana	nucleus	50.15	27.61
GSMUA_Achr3P30690_001	Banana	nucleus	44.21	25.56
GSMUA_Achr9P07890_001	Banana	nucleus	47.18	25.48
PGSC0003DMT400037835	Potato	nucleus	39.47	25.48
GSMUA_Achr6P28550_001	Banana	nucleus	48.07	25.35
GSMUA_Achr3P32510_001	Banana	nucleus	31.16	24.82
GSMUA_Achr7P27500_001	Banana	nucleus	44.81	24.51

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G24940_001
EnsemblPlants:GSMUA_Achr1P24940_001	EnsemblPlants:GSMUA_Achr1T24940_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0S2V1	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002964566	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G24940_001]

Coordinates

chr1:-:19345372..19348365

Molecular Weight (calculated)

37005.6 Da

IEP (calculated)

8.993

GRAVY (calculated)

-0.526

Length

337 amino acids

Sequence
(BLAST)

001: MEVLLGGGVG GAPRSEFLTA DGRDGSSAVV RGAGEVAAPV GLKKATASAA AGQRTSVYRG VTRHRWTGRY EAHLWDNTCR REGQKRKGRQ VYLGGYDDEE
101: KAARAYDLAA LKYWGPTAAT NFPVVCIYSK EIEEMKCLTK QEFIASIRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FATEEEAAEA
201: YDVAAIKFRG PNAVTNFELS RYDMDAIANT ELPIGAPAKR IKQTPQANDD QLPFDRSGNG QHLSSVPPPL LHNLVQLHCP PGFSPGLTCC NLEENDAVDA
301: CSQNLFFLTA NDRLKNQVIN MQPERAGNLQ LRHLTSQ

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.