Factsheet for GSMUA_Achr7P27500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P30690_001	Banana	nucleus	80.68	85.25
GSMUA_Achr4P32280_001	Banana	nucleus	49.19	71.63
GSMUA_Achr8P26510_001	Banana	nucleus	37.99	69.23
PGSC0003DMT400055210	Potato	nucleus	28.57	61.54
GSMUA_Achr3P15150_001	Banana	nucleus	55.03	61.52
GSMUA_Achr7P00740_001	Banana	nucleus	53.25	60.63
CDX72655	Canola	endoplasmic reticulum, golgi	31.98	58.98
VIT_07s0151g00440.t01	Wine grape	nucleus	61.04	55.46
PGSC0003DMT400012588	Potato	nucleus	55.68	52.53
Solyc04g077490.2.1	Tomato	nucleus	55.19	52.15
KRH52140	Soybean	nucleus	55.84	52.12
KRH61449	Soybean	nucleus	54.87	50.98
CDX75673	Canola	nucleus	44.97	50.55
KRH58159	Soybean	nucleus	54.55	50.53
Solyc02g092050.2.1	Tomato	nucleus	52.6	50.15
Bra011782.1-P	Field mustard	nucleus	44.16	49.91
KRH04380	Soybean	nucleus	55.36	49.85
AT4G37750.1	Thale cress	nucleus	44.81	49.73
CDX69324	Canola	nucleus	44.48	49.37
Bra017852.1-P	Field mustard	nucleus	44.48	49.28
KRH28322	Soybean	nucleus	48.38	48.69
CDY44027	Canola	nucleus	43.83	48.3
CDY50260	Canola	nucleus	43.83	48.21
Bra010610.1-P	Field mustard	nucleus	42.69	47.56
KRH77164	Soybean	nucleus	46.75	46.83
GSMUA_Achr1P24940_001	Banana	nucleus	24.51	44.81
GSMUA_AchrUn_...	Banana	nucleus	28.41	44.19
GSMUA_Achr9P13660_001	Banana	nucleus	29.87	42.2
GSMUA_Achr3P05070_001	Banana	nucleus	30.03	40.66
CDY71263	Canola	nucleus	21.27	40.18
GSMUA_AchrUn_...	Banana	nucleus	29.87	39.23
GSMUA_Achr8P09110_001	Banana	nucleus	36.2	37.54
GSMUA_Achr1P21950_001	Banana	nucleus	34.09	37.3
GSMUA_Achr5P25620_001	Banana	nucleus	32.63	36.95
GSMUA_Achr2P05880_001	Banana	nucleus	33.93	36.54
GSMUA_Achr1P12410_001	Banana	nucleus	31.66	35.39
GSMUA_Achr8P09350_001	Banana	plastid	20.62	35.08
GSMUA_Achr5P04670_001	Banana	nucleus	20.45	35.0
GSMUA_Achr9P07890_001	Banana	nucleus	35.39	34.94
GSMUA_Achr3P09410_001	Banana	nucleus	20.29	34.92
GSMUA_Achr3P21460_001	Banana	nucleus	34.09	34.31
GSMUA_Achr6P28550_001	Banana	nucleus	35.23	33.96
GSMUA_Achr3P03630_001	Banana	plastid	21.75	32.37
GSMUA_Achr11P...	Banana	nucleus	26.46	29.53
GSMUA_Achr3P32510_001	Banana	nucleus	18.67	27.19

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr7G27500_001
EnsemblPlants:GSMUA_Achr7P27500_001	EnsemblPlants:GSMUA_Achr7T27500_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TL86	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002951C39	SEG:seg	:	:	:	:

Description

AP2 domain-containing transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr7G27500_001]

Coordinates

chr7:+:28494545..28497284

Molecular Weight (calculated)

67273.6 Da

IEP (calculated)

6.908

GRAVY (calculated)

-0.661

Length

616 amino acids

Sequence
(BLAST)

001: MEVSSEPHHH QNHESHHHQT QPPTAGVSSA APCSLFLSPQ LSSTGICYGG EGENGGGLYS QLSVMPLKSD GSLCIMEALS RSQQQGIVAS PPPKLEDFLG
101: GGPNMGSHGH CGNYDREAMA LSLDSMYYYQ NSETEGDATH SLDALHGQQM QVQRQHQHQL FLHPLQEGMC SGLAASHEMY QVPMEVGAME GGIGPGSIEA
201: VGFGELRSLS LSMSPGSQSS CVTAPAQISS TTERMAFDTT KKMRSGKECQ KQPVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR
301: QVYLGGYDTE EKAARAYDLA ALKYWGPSTH INFPLESYQD EVEEMKNMSR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT
401: FSTQEEAAEA YDIAAIKFRG VNAVTNFDIT RYDVEKIIAS STLLPGELAR KNKAIEAGKD ASSGRNPGRD PAEEDNGAGA GAGWKIVLYQ STQQHTPPSS
501: EPRNHEPMMI GGDYRSPMTY SAAHHGLMGV EAGTSVHGVD DSEKLSNAHL SNQSSLVTSL GSSREGSPDR TGLSMMYVNA SPKFNPTPLV SSMPNMQLRP
601: SASITQMPVF DAWNDV

Best Arabidopsis Sequence Match ( AT4G37750.1 )
(BLAST)

001: MKSFCDNDDN NHSNTTNLLG FSLSSNMMKM GGRGGREAIY SSSTSSAATS SSSVPPQLVV GDNTSNFGVC YGSNPNGGIY SHMSVMPLRS DGSLCLMEAL
101: NRSSHSNHHQ DSSPKVEDFF GTHHNNTSHK EAMDLSLDSL FYNTTHEPNT TTNFQEFFSF PQTRNHEEET RNYGNDPSLT HGGSFNVGVY GEFQQSLSLS
201: MSPGSQSSCI TGSHHHQQNQ NQNHQSQNHQ QISEALVETS VGFETTTMAA AKKKRGQEDV VVVGQKQIVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL
301: WDNSFKKEGH SRKGRQVYLG GYDMEEKAAR AYDLAALKYW GPSTHTNFSA ENYQKEIEDM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA
401: RIGRVAGNKD LYLGTFGTQE EAAEAYDVAA IKFRGTNAVT NFDITRYDVD RIMSSNTLLS GELARRNNNS IVVRNTEDQT ALNAVVEGGS NKEVSTPERL
501: LSFPAIFALP QVNQKMFGSN MGGNMSPWTS NPNAELKTVA LTLPQMPVFA AWADS

Arabidopsis Description

ANTAP2-like ethylene-responsive transcription factor ANT [Source:UniProtKB/Swiss-Prot;Acc:Q38914]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.