Factsheet for GSMUA_Achr8P09110_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P21460_001	Banana	nucleus	75.42	73.2
GSMUA_Achr6P28550_001	Banana	nucleus	67.0	62.28
GSMUA_Achr9P07890_001	Banana	nucleus	64.65	61.54
GSMUA_Achr5P25620_001	Banana	nucleus	51.85	56.62
GSMUA_Achr8P26510_001	Banana	nucleus	30.13	52.96
GSMUA_Achr2P05880_001	Banana	nucleus	50.34	52.27
GSMUA_AchrUn_...	Banana	nucleus	34.51	51.77
GSMUA_Achr9P13660_001	Banana	nucleus	36.53	49.77
GSMUA_Achr1P24940_001	Banana	nucleus	28.11	49.55
GSMUA_Achr4P32280_001	Banana	nucleus	34.68	48.7
GSMUA_Achr3P05070_001	Banana	nucleus	36.53	47.69
GSMUA_AchrUn_...	Banana	nucleus	36.2	45.84
Os01t0899800-01	Rice	nucleus	51.35	43.88
HORVU3Hr1G089160.2	Barley	nucleus	48.15	43.33
GSMUA_Achr1P21950_001	Banana	nucleus	40.74	42.98
KXG33917	Sorghum	nucleus	50.51	42.67
TraesCS3A01G395500.1	Wheat	nucleus	50.17	42.45
Zm00001d042492_P001	Maize	nucleus	49.49	41.64
GSMUA_Achr3P15150_001	Banana	nucleus	38.05	41.02
GSMUA_Achr7P00740_001	Banana	nucleus	37.04	40.67
TraesCS3D01G389100.1	Wheat	nucleus	50.34	39.97
TraesCS3B01G427300.1	Wheat	nucleus, plastid	49.83	39.52
GSMUA_Achr1P12410_001	Banana	nucleus	35.35	38.11
GSMUA_Achr3P30690_001	Banana	nucleus	37.37	38.08
GSMUA_Achr5P04670_001	Banana	nucleus	22.22	36.67
GSMUA_Achr7P27500_001	Banana	nucleus	37.54	36.2
GSMUA_Achr8P09350_001	Banana	plastid	21.89	35.91
GSMUA_Achr3P09410_001	Banana	nucleus	20.71	34.36
GSMUA_Achr3P03630_001	Banana	plastid	23.74	34.06
GSMUA_Achr11P...	Banana	nucleus	30.3	32.61
GSMUA_Achr3P32510_001	Banana	nucleus	20.03	28.13

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G09110_001
EnsemblPlants:GSMUA_Achr8P09110_001	EnsemblPlants:GSMUA_Achr8T09110_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TNW4	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00029487E4	SEG:seg	:	:	:	:

Description

AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G09110_001]

Coordinates

chr8:-:6241759..6245151

Molecular Weight (calculated)

64151.3 Da

IEP (calculated)

7.077

GRAVY (calculated)

-0.555

Length

594 amino acids

Sequence
(BLAST)

001: MNNWLAFSLS PQELPPSQSH QSNSPSAAVS HLISGDDVSA SCYGLSADST SEPPMGIPTL RPDVPFGVLE AFNRPYHQTQ DWNMKCLDFK GGSSELSMLV
101: GSSSTNQSNM VEDQPKLEDF LGGNSFSDHD HKVLPAGLSG AYSSSGDEYI NSIGLSMIKT WLRNQPNIPQ QQASINSSND MAGGLSLSMS TGSQSSSALP
201: LLAAGPSGGG ESSSSDNKQK GIGGSLDAQT GAMEAVSRKS VDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK GRQVYLGGYD KEEKAARAYD
301: LAALKYWGPT TTTNFPISNY EKELEEMKHM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF
401: RGLNAVTNFD MSRYDVKSIL ESNTLPIGGA AKRLKDVAEH AEASVNGRGA ADHHHLASQF DGISGYGSLR HHGWPAIAFH QPQPLGVQYP YGLPRGCTES
501: SSVVYNGNMA SSSGSYQGGY VMPMSTVVTD QSHTANRGSC GATFVDDEGK QIGYDSSLNA YYLSQQLSSA MASRSNTMAA AGHAAPLFTV WNDA

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.