Factsheet for GSMUA_Achr3P21460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09110_001	Banana	nucleus	73.2	75.42
GSMUA_Achr6P28550_001	Banana	nucleus	61.76	59.15
GSMUA_Achr9P07890_001	Banana	nucleus	59.31	58.17
GSMUA_Achr5P25620_001	Banana	nucleus	49.02	55.15
GSMUA_Achr2P05880_001	Banana	nucleus	48.69	52.1
GSMUA_AchrUn_...	Banana	nucleus	33.66	52.02
GSMUA_Achr1P24940_001	Banana	nucleus	27.61	50.15
GSMUA_Achr8P26510_001	Banana	nucleus	27.29	49.41
GSMUA_Achr9P13660_001	Banana	nucleus	35.13	49.31
GSMUA_Achr3P05070_001	Banana	nucleus	35.29	47.47
GSMUA_Achr4P32280_001	Banana	nucleus	32.35	46.81
GSMUA_AchrUn_...	Banana	nucleus	35.62	46.48
GSMUA_Achr1P21950_001	Banana	nucleus	39.38	42.81
GSMUA_Achr3P15150_001	Banana	nucleus	35.78	39.75
GSMUA_Achr7P00740_001	Banana	nucleus	34.15	38.63
GSMUA_Achr1P12410_001	Banana	nucleus	33.99	37.75
GSMUA_Achr8P09350_001	Banana	plastid	21.73	36.74
GSMUA_Achr5P04670_001	Banana	nucleus	21.57	36.67
GSMUA_Achr3P30690_001	Banana	nucleus	34.48	36.19
GSMUA_Achr7P27500_001	Banana	nucleus	34.31	34.09
GSMUA_Achr3P09410_001	Banana	nucleus	19.93	34.08
GSMUA_Achr11P...	Banana	nucleus	29.74	32.97
GSMUA_Achr3P03630_001	Banana	plastid	22.22	32.85
GSMUA_Achr3P32510_001	Banana	nucleus	19.28	27.9

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G21460_001
EnsemblPlants:GSMUA_Achr3P21460_001	EnsemblPlants:GSMUA_Achr3T21460_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SGL2	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000296A76C	SEG:seg	:	:	:	:

Description

Putative AP2-like ethylene-responsive transcription factor BBM2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G21460_001]

Coordinates

chr3:+:22425268..22428436

Molecular Weight (calculated)

66427.4 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.695

Length

612 amino acids

Sequence
(BLAST)

001: MNNWLAFSLS PHELPSSQPH QSHSPSAAVS HFISGDDVST NCYDFSADST SEPPMGIPTL RPDLSFCILE AFDRHHHHQT QDWNMKSFGG PSELSVLVGS
101: SSNQNTMEED EPKLEDFLGG NSISDHDRKV LPAALTSDDD GNGGSSSNSI GPSVIKTWLR NQSIPQQQAN DMAGGGGSSC SSSAMVANSS SSDNKQKGTA
201: GGADAQTGPM EAVPRKAVDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ VYLGGYDKED KAARAYDLAA LKYWGPTTTT NFPISNYENE
301: LEEMKHMTRQ EFIASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVKSILESN
401: MLPVGGAAKR LKDVGEHAEP GAIGRRAEDS RLAPRFDGTG GYGASHHQGW PTTVAFHQPP PLQPPRWGAQ FPYGPTRGWC KQEPSSVLHH SLVSVDASSL
501: EHSTGSNSVV YGGSYHGGGY VMPMSTVVTD QSGAANQAGC GNLIDEEGTA DPYSSSRNAY YLAHQLSSGN AKAREYEQNN AWMHAPALAM ASRSNGMAAD
601: HGAPPFTVWN DA

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.