Factsheet for GSMUA_Achr3P32510_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g01690.t01	Wine grape	nucleus	44.44	56.46
KRH45852	Soybean	nucleus	45.63	47.42
KRG99157	Soybean	nucleus	45.39	47.29
GSMUA_Achr5P04670_001	Banana	nucleus	32.15	37.78
GSMUA_Achr8P09350_001	Banana	plastid	31.21	36.46
GSMUA_Achr3P09410_001	Banana	nucleus	28.61	33.8
GSMUA_Achr3P03630_001	Banana	plastid	31.44	32.13
GSMUA_Achr8P26510_001	Banana	nucleus	25.06	31.36
GSMUA_Achr1P24940_001	Banana	nucleus	24.82	31.16
GSMUA_AchrUn_...	Banana	nucleus	26.71	28.54
GSMUA_Achr9P13660_001	Banana	nucleus	27.19	26.38
GSMUA_Achr4P32280_001	Banana	nucleus	26.24	26.24
GSMUA_Achr3P05070_001	Banana	nucleus	27.66	25.71
GSMUA_AchrUn_...	Banana	nucleus	27.19	24.52
GSMUA_Achr5P25620_001	Banana	nucleus	27.19	21.14
GSMUA_Achr7P00740_001	Banana	nucleus	26.48	20.7
GSMUA_Achr2P05880_001	Banana	nucleus	27.19	20.1
GSMUA_Achr8P09110_001	Banana	nucleus	28.13	20.03
GSMUA_Achr3P15150_001	Banana	nucleus	26.0	19.96
GSMUA_Achr11P...	Banana	nucleus	26.0	19.93
GSMUA_Achr3P30690_001	Banana	nucleus	27.42	19.9
GSMUA_Achr1P12410_001	Banana	nucleus	25.77	19.78
GSMUA_Achr3P21460_001	Banana	nucleus	27.9	19.28
GSMUA_Achr9P07890_001	Banana	nucleus	28.13	19.07
GSMUA_Achr1P21950_001	Banana	nucleus	25.3	19.01
GSMUA_Achr7P27500_001	Banana	nucleus	27.19	18.67
GSMUA_Achr6P28550_001	Banana	nucleus	27.19	18.0

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr3G32510_001	EnsemblPlants:GSMUA_Achr3P32510_001	EnsemblPlants:GSMUA_Achr3T32510_001	InterPro:IPR001471
InterPro:IPR036955	UniProt:M0SJR5	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF71	SMART:SM00380	SUPFAM:SSF54171	TMHMM:TMhelix	UniParc:UPI0002969888	SEG:seg

Description

AP2 domain-containing transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr3G32510_001]

Coordinates

chr3:+:30419259..30421608

Molecular Weight (calculated)

47962.2 Da

IEP (calculated)

9.172

GRAVY (calculated)

-0.647

Length

423 amino acids

Sequence
(BLAST)

001: MDVIPVKSET NGTGRRLHGA AVLVPSNGNQ VVKVIKRRKR EPTLPQIGSD ANREMIDQSS TCSTMKRSSR FRGVSRHRWT GRFEAHLWDK GSWNATQRKK
101: GKQGTLFQIL LTISFCLFFN FIFYWGPSTY TNFQVSDYDK EIQVMQSVTK EEYLASIRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT
201: YSTQEEAARA YDIAAIEYRG INAVTNFDLS TYIRWLKPGA SSNVRNTTGE QHANIDEFCA LQIPNNHFST GQAEEHLNFN PFITEYMNLQ YKQEYTADQF
301: PGGGGAAAAV TGCTGASSKS SPTALSLLLK SSIFRQLVDN FSAVNEEFEG DGTKERKRLQ GEHDQSNGIF YEEMAGAPYV RDPNDEHGQR IELLRETVCC
401: YEHSEQQTHW NGIMSISSMQ QLK

Best Arabidopsis Sequence Match ( AT1G16060.1 )
(BLAST)

001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.