Factsheet for GSMUA_Achr5P25620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09110_001	Banana	nucleus	56.62	51.85
GSMUA_Achr3P21460_001	Banana	nucleus	55.15	49.02
GSMUA_Achr8P26510_001	Banana	nucleus	29.96	48.22
GSMUA_AchrUn_...	Banana	nucleus	34.74	47.73
GSMUA_Achr9P07890_001	Banana	nucleus	54.04	47.12
GSMUA_Achr9P13660_001	Banana	nucleus	37.13	46.33
GSMUA_Achr1P24940_001	Banana	nucleus	28.68	46.29
GSMUA_Achr2P05880_001	Banana	nucleus	48.53	46.15
GSMUA_Achr6P28550_001	Banana	nucleus	53.31	45.38
GSMUA_Achr3P05070_001	Banana	nucleus	37.32	44.62
GSMUA_AchrUn_...	Banana	nucleus	38.24	44.35
GSMUA_Achr4P32280_001	Banana	nucleus	34.01	43.74
Os01t0899800-01	Rice	nucleus	52.76	41.3
HORVU3Hr1G089160.2	Barley	nucleus	49.26	40.61
KXG33917	Sorghum	nucleus	51.65	39.97
TraesCS3A01G395500.1	Wheat	nucleus	51.47	39.89
Zm00001d042492_P001	Maize	nucleus	51.47	39.66
GSMUA_Achr1P21950_001	Banana	nucleus	40.26	38.9
TraesCS3D01G389100.1	Wheat	nucleus	51.47	37.43
TraesCS3B01G427300.1	Wheat	nucleus, plastid	51.29	37.25
GSMUA_Achr3P15150_001	Banana	nucleus	37.5	37.02
GSMUA_Achr7P00740_001	Banana	nucleus	36.21	36.41
GSMUA_Achr1P12410_001	Banana	nucleus	36.4	35.93
GSMUA_Achr8P09350_001	Banana	plastid	23.71	35.64
GSMUA_Achr5P04670_001	Banana	nucleus	23.35	35.28
GSMUA_Achr3P30690_001	Banana	nucleus	37.5	34.99
GSMUA_Achr7P27500_001	Banana	nucleus	36.95	32.63
GSMUA_Achr11P...	Banana	nucleus	32.72	32.25
GSMUA_Achr3P03630_001	Banana	plastid	24.26	31.88
GSMUA_Achr3P09410_001	Banana	nucleus	20.96	31.84
GSMUA_Achr3P32510_001	Banana	nucleus	21.14	27.19

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G25620_001
EnsemblPlants:GSMUA_Achr5P25620_001	EnsemblPlants:GSMUA_Achr5T25620_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0T1N7	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF42	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000295B52D	SEG:seg	:	:	:	:

Description

Putative AP2-like ethylene-responsive transcription factor BBM2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G25620_001]

Coordinates

chr5:+:26575938..26578915

Molecular Weight (calculated)

59414.7 Da

IEP (calculated)

7.158

GRAVY (calculated)

-0.573

Length

544 amino acids

Sequence
(BLAST)

001: MASMNHHWLA FSLSPQELPS SQSHQHHPGD DVSTDCFGLY ASFGLVDALN RPHHQTQDWN SKSLDFDGGA SELSMLVGSN GSRNNAVEEE PKLEDFLGDA
101: CGSRGMYMFS DTSSVTSSAR DGALMGNPIG VSTMKTWLRS QPTPYQQANN SSSDTAGATT GQASVVLSMS MSTGSQSGSA LDSQTGAITA APRRSVDTFG
201: QRSSIYRGVT RHRWTGRYEA HLWDNSCRRE GQARKGRQVY LGGYDKEERA ARAYDLAALK YWGPTTTTNF PINNYEKELE EMQHMTRQEF IASIRRKSSG
301: FSRGASIYRG IYMSPCFRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIRF RGLSAVTNFD MNRYDVKSIL ESNTVCGTGK RLRDVASEHA
401: EHAGRRTIAF HRPQPLELSG LPCKQEEDAV VAAAHGLGGL HQLHLGTDTH SFFQPNSALH HLASVDSSWL EHSTGSNSVT YNGVMAGSSG SYQGSEKTFY
501: LSQQSPSGSA TWTPAAAQAM AWRSNCMAAA AGHGTPLFTV WDDA

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.