Factsheet for GSMUA_Achr3P09410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0813300-00	Rice	nucleus	22.91	64.57
GSMUA_Achr8P09350_001	Banana	plastid	42.46	41.99
TraesCS4B01G136400.1	Wheat	plastid	34.92	37.88
VIT_13s0047g00340.t01	Wine grape	plastid	38.27	36.93
GSMUA_Achr3P03630_001	Banana	plastid	42.18	36.47
GSMUA_Achr5P04670_001	Banana	nucleus	36.31	36.11
TraesCS4A01G181300.1	Wheat	plastid	35.47	35.18
TraesCS4D01G131200.1	Wheat	plastid	34.64	34.93
KXG33588	Sorghum	plastid	38.83	34.84
KRH13193	Soybean	nucleus	39.66	34.47
CDX73488	Canola	nucleus	39.39	34.14
TraesCS3B01G368400.1	Wheat	plastid	36.31	33.77
CDX78230	Canola	plastid	39.11	33.73
CDX67595	Canola	plastid	39.11	33.65
Bra007066.1-P	Field mustard	plastid	38.55	33.5
Bra003178.1-P	Field mustard	plastid	38.55	33.41
AT3G54320.1	Thale cress	plastid	40.78	33.33
TraesCS3D01G330400.1	Wheat	plastid	34.92	33.16
GSMUA_Achr1P24940_001	Banana	nucleus	31.01	32.94
KRH44733	Soybean	nucleus	38.83	32.63
GSMUA_Achr8P26510_001	Banana	nucleus	30.73	32.54
Solyc01g096860.1.1	Tomato	nucleus	38.83	31.38
PGSC0003DMT400070735	Potato	nucleus	37.99	31.34
GSMUA_AchrUn_...	Banana	nucleus	33.8	30.56
Zm00001d043116_P002	Maize	nucleus	37.99	29.44
GSMUA_Achr4P32280_001	Banana	nucleus	34.08	28.84
GSMUA_Achr3P32510_001	Banana	nucleus	33.8	28.61
GSMUA_Achr9P13660_001	Banana	nucleus	32.12	26.38
GSMUA_Achr3P05070_001	Banana	nucleus	32.96	25.93
GSMUA_AchrUn_...	Banana	nucleus	32.68	24.95
GSMUA_Achr7P00740_001	Banana	nucleus	34.92	23.11
GSMUA_Achr3P15150_001	Banana	nucleus	34.92	22.69
GSMUA_Achr1P21950_001	Banana	nucleus	34.92	22.2
GSMUA_Achr3P30690_001	Banana	nucleus	34.92	21.44
GSMUA_Achr1P12410_001	Banana	nucleus	32.4	21.05
GSMUA_Achr5P25620_001	Banana	nucleus	31.84	20.96
GSMUA_Achr8P09110_001	Banana	nucleus	34.36	20.71
GSMUA_Achr11P...	Banana	nucleus	31.84	20.65
GSMUA_Achr2P05880_001	Banana	nucleus	32.68	20.45
GSMUA_Achr7P27500_001	Banana	nucleus	34.92	20.29
GSMUA_Achr3P21460_001	Banana	nucleus	34.08	19.93
GSMUA_Achr9P07890_001	Banana	nucleus	33.52	19.23
GSMUA_Achr6P28550_001	Banana	nucleus	33.24	18.62

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr3G09410_001
EnsemblPlants:GSMUA_Achr3P09410_001	EnsemblPlants:GSMUA_Achr3T09410_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SD58	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002964AB6
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G09410_001]

Coordinates

chr3:+:6797164..6799345

Molecular Weight (calculated)

40056.8 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.622

Length

358 amino acids

Sequence
(BLAST)

001: MEKSVQTPQP QSPSSSISTI SFSFSSHTSV PKLDEPKQKK AGKRKARTAN ADAPCLKVKK TSNFKGVTRH KLTGRFEAHL WDRTSWNGRK NKKGRQVYLG
101: AFKDEETAAR TYDLAALKYW GPQTILNFPA QTYATEYYMM HQISREECVA SLRRRSDGFS RGVSKYRGVA RHHQNGRWEA RIGHVGGSKY LYLGTFDTQE
201: EAAQAYDMAA IKYRGSKAVT NFDVGRYTQN PSFPQAQSCP APPLELFPEL TQPQPQPYFF EPADFVTLHN LVPLQVTDTV AEIPLLDGTS GFPFDLTDGD
301: AFAELYTGFD VATSHMDVES KLFDSDLWQT FESFLKEIEG DDALLSVGGA SNNEPKAC

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.