Factsheet for TraesCS3B01G368400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G330400.1	Wheat	plastid	90.39	92.31
Os01t0813300-00	Rice	nucleus	23.64	71.65
TraesCS4B01G136400.1	Wheat	plastid	58.44	68.18
KXG33588	Sorghum	plastid	52.47	50.63
Zm00001d043116_P002	Maize	nucleus	51.43	42.86
GSMUA_Achr3P09410_001	Banana	nucleus	33.77	36.31
CDX78230	Canola	plastid	36.1	33.49
CDX73488	Canola	nucleus	35.84	33.41
Bra007066.1-P	Field mustard	plastid	35.32	33.01
CDX67595	Canola	plastid	35.32	32.69
VIT_13s0047g00340.t01	Wine grape	plastid	31.17	32.34
KRH13193	Soybean	nucleus	34.55	32.28
TraesCS5B01G220400.2	Wheat	nucleus	33.25	32.24
Bra003178.1-P	Field mustard	plastid	34.55	32.2
AT3G54320.1	Thale cress	plastid	36.62	32.19
TraesCS6B01G153800.1	Wheat	nucleus	27.79	31.75
KRH44733	Soybean	nucleus	34.81	31.46
PGSC0003DMT400070735	Potato	nucleus	34.29	30.41
Solyc01g096860.1.1	Tomato	nucleus	34.81	30.25
TraesCS4B01G180600.1	Wheat	nucleus	28.05	28.8
TraesCS7B01G401400.1	Wheat	nucleus	29.09	23.98
TraesCS2B01G534000.1	Wheat	nucleus	29.09	23.19
TraesCS4B01G292900.1	Wheat	nucleus	30.13	21.97
TraesCS2B01G268100.2	Wheat	nucleus	30.13	19.33
TraesCS6B01G252000.1	Wheat	nucleus	32.21	18.73
TraesCS2B01G378100.1	Wheat	nucleus	31.95	18.64
TraesCS5B01G410200.1	Wheat	nucleus	29.61	18.15
TraesCS4B01G235900.2	Wheat	nucleus	29.35	17.88
TraesCS3B01G427300.1	Wheat	nucleus, plastid	31.43	16.15

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3B01G368400	EnsemblPlants:TraesCS3B01G368400.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr3B:+:580782661..580785104

Molecular Weight (calculated)

42671.2 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.655

Length

385 amino acids

Sequence
(BLAST)

001: MVTMTTTKKQ PCRGAAPLSP ASSSSASSWP WGSRIAPSSA RTLGRKKKKR GRSDAVVVPS RRSSIYKGVT RHSISGRYEA HLWDRHCRST AQGRRGKQVY
101: LGCYKTEEEA ARTHDLAALK CWGSDCGLLN FPVDTYRQER ERMQRMTREE YLARLRRNSS GFTRGVSKYR GVTRHHANGR WEARIGHAAG TQYSYLGIFD
201: TQEEAARAYD LAAIRIRGPG AVTNFDADCY VDIPQPLPCK AEPDMEPAAA RPCPLPPAPL PLLPPKVEPK DEPEDDFEFE REPPPAPALR DDADRVDRAI
301: AEVLQALCVD RADFEARYPP RRARVAAPGA GWPTPLDSDE LPDLPVPGDV GFFEDDIESV LFAAPGDAEV PRAATISSLS SGRWW

Best Arabidopsis Sequence Match ( AT3G54320.1 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.