Factsheet for TraesCS5B01G410200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G415500.1	Wheat	nucleus	96.66	96.96
TraesCS5A01G405400.1	Wheat	nucleus	95.22	95.07
HORVU5Hr1G098450.2	Barley	nucleus	89.33	88.91
EER93382	Sorghum	nucleus	64.97	62.96
Zm00001d034204_P001	Maize	nucleus	67.04	62.93
GSMUA_Achr4P32280_001	Banana	nucleus	40.45	60.05
PGSC0003DMT400055210	Potato	nucleus	25.32	55.59
CDX72655	Canola	endoplasmic reticulum, golgi	29.46	55.39
TraesCS2B01G268100.2	Wheat	nucleus	52.87	55.33
GSMUA_Achr7P00740_001	Banana	nucleus	45.54	52.87
KRG88628	Soybean	nucleus	36.94	47.84
CDX75673	Canola	nucleus	41.08	47.08
VIT_18s0001g08610.t01	Wine grape	nucleus	50.16	46.74
AT4G37750.1	Thale cress	nucleus	41.08	46.49
Bra011782.1-P	Field mustard	nucleus	40.29	46.42
Solyc04g077490.2.1	Tomato	nucleus	47.93	46.17
CDX69324	Canola	nucleus	40.76	46.13
PGSC0003DMT400012588	Potato	nucleus	47.93	46.09
Solyc02g092050.2.1	Tomato	nucleus	46.82	45.51
KRH15454	Soybean	nucleus	43.15	45.24
Bra017852.1-P	Field mustard	nucleus	39.81	44.96
VIT_07s0151g00440.t01	Wine grape	nucleus	48.41	44.84
CDY44027	Canola	nucleus	39.81	44.72
CDY50260	Canola	nucleus	39.65	44.46
TraesCS4B01G235900.2	Wheat	nucleus	44.43	44.15
Bra010610.1-P	Field mustard	nucleus	38.85	44.12
TraesCS4B01G180600.1	Wheat	nucleus	26.27	44.0
KRH28322	Soybean	nucleus	42.83	43.95
KRH61449	Soybean	nucleus	46.34	43.89
KRH52140	Soybean	nucleus	45.7	43.48
KRH58159	Soybean	nucleus	46.02	43.46
KRH77164	Soybean	nucleus	42.2	43.09
KRH04380	Soybean	nucleus	46.5	42.69
TraesCS7B01G401400.1	Wheat	nucleus	28.98	38.97
TraesCS2B01G534000.1	Wheat	nucleus	29.62	38.51
TraesCS4B01G292900.1	Wheat	nucleus	32.17	38.26
CDY71263	Canola	nucleus	18.63	35.89
TraesCS5B01G220400.2	Wheat	nucleus	22.13	35.01
TraesCS6B01G153800.1	Wheat	nucleus	18.63	34.72
TraesCS4B01G136400.1	Wheat	plastid	17.99	34.24
TraesCS2B01G378100.1	Wheat	nucleus	35.19	33.48
TraesCS6B01G252000.1	Wheat	nucleus	33.92	32.18
TraesCS3B01G368400.1	Wheat	plastid	18.15	29.61
TraesCS3B01G427300.1	Wheat	nucleus, plastid	33.6	28.17

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5B01G410200	EnsemblPlants:TraesCS5B01G410200.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:585472927..585476221

Molecular Weight (calculated)

66040.7 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.423

Length

628 amino acids

Sequence
(BLAST)

001: MTNGGHSMSG ASIAGGAGGW LGFSLSPHVA MDAAAGSGIV DMAGHHHAHH GGVYYHPDAV ASSPMSFYFG GGDNVSAASG GYYSGISALP LRSDGSLCLA
101: DALRRSEQKH HGAEVSAPPK LEDFLGASPA MALTLDNSGY YYGGQGHGHG DAGEGQHQLP SAMMPGSGGH HMYYDAHAAL LDEQAAATSA AMEAAGWMAR
201: AGDVYEVDGG NGEDGGGAIV TAGHDNPGGY VHPLTLSMSS GSQSSCVTMQ QSAAQAHAYV GQATAASKKR GAGAGAGQNK QPVVHRKCID TFGQRTSKYR
301: GVTRHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDME EKAARAYDLA ALKYWGASTH INFPVEDYQE ELEVMKNMTR QEYVAHLRRK SSGFSRGASM
401: YRGVTRHHQQ GRWQARIGRV SGNKDLYLGT FSAEADAAEA YDVAAIKFRG LNAVTNFDIN RYDVDKIMES STLLPGDQVR RRKDGPDDSA AVVASAAAAL
501: VQAGSATDYW RQPAAVTTDE HSRHHLGLLS SESFSLLRGV VSVDGDAAGA QQGQGNRMSG ASSLATSLSN SREQSPDQGG GLAMLFARPA APKLASSLPM
601: GTWVSSPAPA RPGVSVAHMP MFAAWADA

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.