Factsheet for Solyc04g077490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012588	Potato	nucleus	95.71	95.56
GSMUA_Achr8P26510_001	Banana	nucleus	34.2	65.98
Os07t0124700-01	Rice	nucleus	30.21	59.52
GSMUA_Achr3P30690_001	Banana	nucleus	52.15	58.32
GSMUA_Achr3P15150_001	Banana	nucleus	48.16	56.99
GSMUA_Achr7P27500_001	Banana	nucleus	52.15	55.19
Solyc02g092050.2.1	Tomato	nucleus	53.68	54.18
TraesCS2B01G268100.2	Wheat	nucleus	47.85	52.0
TraesCS2D01G256600.2	Wheat	nucleus	47.7	51.83
TraesCS2A01G267600.2	Wheat	nucleus	47.7	51.75
Zm00001d018731_P001	Maize	nucleus	47.55	50.57
Zm00001d007840_P001	Maize	nucleus	45.55	49.5
TraesCS5A01G405400.1	Wheat	nucleus	46.93	48.65
TraesCS5D01G415500.1	Wheat	nucleus	46.17	48.08
TraesCS5B01G410200.1	Wheat	nucleus	46.17	47.93
HORVU5Hr1G098450.2	Barley	nucleus	44.94	46.43
Zm00001d034204_P001	Maize	nucleus	47.24	46.04
EER93382	Sorghum	nucleus	45.71	45.99
KXG34322	Sorghum	nucleus	48.01	45.96
Solyc06g068570.2.1	Tomato	nucleus	19.79	40.95
Solyc07g018290.2.1	Tomato	nucleus	27.91	38.89
Solyc12g010490.1.1	Tomato	plastid	21.47	38.46
Solyc11g061750.1.1	Tomato	nucleus	32.21	38.32
Solyc05g051380.2.1	Tomato	nucleus	29.29	38.12
Solyc11g010710.1.1	Tomato	nucleus	31.6	37.94
Solyc03g117720.2.1	Tomato	nucleus, plastid	21.47	37.74
Solyc11g008560.1.1	Tomato	nucleus	36.96	35.6
Solyc06g066390.1.1	Tomato	nucleus	20.71	33.33
Solyc01g096860.1.1	Tomato	nucleus	21.63	31.83
Solyc08g076380.1.1	Tomato	nucleus	19.63	29.43

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4BUI6	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g077490.2	EnsemblPlants:Solyc04g077490.2.1	UniParc:UPI000276647C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:62429315..62432687

Molecular Weight (calculated)

71583.3 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.645

Length

652 amino acids

Sequence
(BLAST)

001: MKSMNDDSRS SNNNISNNNS AAANTNWLGF SLTPHMKMEV TNSSDTQHQH QFAQSFYLSS SPPPPMNVST TSALCYENNP FHSTLSVMPL KSDGSLCIME
101: ALSRSHADAM VQSSSPKLED FLGGASMGNS QYGSHDREAM ALSLDSLYYH QNEEEIQVHS HHPYYSPMHC HGMYHQETLL EETKPTQISN CEAQMTGNEL
201: KSWGQYAEQH AIDQHINATC SMVAAAAAAA SGGGGGTSGC NELQSLSLSM NPGSQSSCVT PRQISPSGLE CVAVESKKRA SGKVAQKQPV HRKSIDTFGQ
301: RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQVYL GGYDMEEKAA RAYDLAALKY WGPSTHINFP LENYQKELDD MKNMTRQEYV AHLRRKSSGF
401: SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDVA AIKFRGVNAV TNFDISRYDV EKIMASNTLP AGELAKRTKE RESIEYNNNT
501: GGVGGQKNEE CVDNNNNGTI TDWKMVLYQT SNPSLGSSYR NPTSFSMALQ DLIGIDSMTN SNNHHHATIL DHEQNKIGNP FSNASSLVTS LGSSREASPD
601: KSATAASLVF AKPTKFAVPT ATSVNACIPS AQLRPIPVSM AHLPVFAALN DA

Best Arabidopsis Sequence Match ( AT4G37750.1 )
(BLAST)

001: MKSFCDNDDN NHSNTTNLLG FSLSSNMMKM GGRGGREAIY SSSTSSAATS SSSVPPQLVV GDNTSNFGVC YGSNPNGGIY SHMSVMPLRS DGSLCLMEAL
101: NRSSHSNHHQ DSSPKVEDFF GTHHNNTSHK EAMDLSLDSL FYNTTHEPNT TTNFQEFFSF PQTRNHEEET RNYGNDPSLT HGGSFNVGVY GEFQQSLSLS
201: MSPGSQSSCI TGSHHHQQNQ NQNHQSQNHQ QISEALVETS VGFETTTMAA AKKKRGQEDV VVVGQKQIVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL
301: WDNSFKKEGH SRKGRQVYLG GYDMEEKAAR AYDLAALKYW GPSTHTNFSA ENYQKEIEDM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA
401: RIGRVAGNKD LYLGTFGTQE EAAEAYDVAA IKFRGTNAVT NFDITRYDVD RIMSSNTLLS GELARRNNNS IVVRNTEDQT ALNAVVEGGS NKEVSTPERL
501: LSFPAIFALP QVNQKMFGSN MGGNMSPWTS NPNAELKTVA LTLPQMPVFA AWADS

Arabidopsis Description

ANTAP2-like ethylene-responsive transcription factor ANT [Source:UniProtKB/Swiss-Prot;Acc:Q38914]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.