Factsheet for Solyc06g068570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g054820.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16060.1	Solyc05g054820.1.1	AT3G55150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33356	Canola	nucleus	40.63	66.67
KRH47304	Soybean	nucleus	60.63	65.86
KRH44591	Soybean	plastid	61.27	61.66
Bra035137.1-P	Field mustard	nucleus	59.37	60.71
CDX88560	Canola	nucleus	59.37	60.52
AT1G79700.2	Thale cress	nucleus	59.05	59.42
Bra026082.1-P	Field mustard	nucleus	61.59	58.79
CDX87360	Canola	nucleus	58.41	58.6
CDY35066	Canola	nucleus	61.27	58.48
VIT_09s0018g01650.t01	Wine grape	plastid	66.67	58.17
Solyc03g117720.2.1	Tomato	nucleus, plastid	67.94	57.68
AT1G16060.1	Thale cress	nucleus	61.9	56.52
Solyc12g010490.1.1	Tomato	plastid	60.63	52.47
GSMUA_Achr5P04670_001	Banana	nucleus	57.14	50.0
Os09t0423800-01	Rice	nucleus	55.87	48.22
TraesCS6B01G153800.1	Wheat	nucleus	48.89	45.7
TraesCS5A01G221600.1	Wheat	nucleus	56.83	45.2
TraesCS5D01G229400.1	Wheat	nucleus	56.51	44.95
TraesCS5B01G220400.2	Wheat	nucleus	56.51	44.84
OQU89519	Sorghum	plastid	55.56	44.3
Zm00001d020540_P002	Maize	plastid	56.19	43.07
Os08t0442400-01	Rice	nucleus	55.87	42.0
TraesCS6A01G125700.1	Wheat	nucleus	45.4	40.97
Zm00001d032144_P001	Maize	nucleus	48.89	38.02
OQU80549	Sorghum	nucleus	49.52	35.45
Solyc06g066390.1.1	Tomato	nucleus	44.44	34.57
Solyc01g096860.1.1	Tomato	nucleus	47.62	33.86
Solyc08g076380.1.1	Tomato	nucleus	42.54	30.8
Solyc07g018290.2.1	Tomato	nucleus	38.41	25.85
Solyc05g051380.2.1	Tomato	nucleus	39.05	24.55
Solyc11g010710.1.1	Tomato	nucleus	40.0	23.2
Solyc11g061750.1.1	Tomato	nucleus	38.1	21.9
Solyc04g077490.2.1	Tomato	nucleus	40.95	19.79
Solyc11g008560.1.1	Tomato	nucleus	41.27	19.2
Solyc02g092050.2.1	Tomato	nucleus	38.73	18.89

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:K4C831	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF20	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc06g068570.2
EnsemblPlants:Solyc06g068570.2.1	UniParc:UPI00027663AD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:42500276..42505496

Molecular Weight (calculated)

36348.1 Da

IEP (calculated)

6.997

GRAVY (calculated)

-0.876

Length

315 amino acids

Sequence
(BLAST)

001: MAKTSKLSKQ NTCLSNKDTD NSISKVKTKR KPRDSPPQRR SSIYRGVTRH RWTGRYEAHL WDKNCWNESQ TKKGRQVYLG AYNEEEAAAH AYDLAALKYW
101: GQHTILNFSV STYEKEIKEM ETQSREEYIG SLRRRSSGFS RGVSRYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYASEE EAAIAYDMAA IQYRGPNAVT
201: NFDISRYNNS LGANPNDMNI PMPNTNKEEK TSSSVVDCPE TPPEVEKCRR ITTFPDDIQT YFDCQDSSSS FVEDSHIIFG DLESFVLPMM FESCHQLEEF
301: LSFSPYSEFE LETSD

Best Arabidopsis Sequence Match ( AT1G16060.1 )
(BLAST)

001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.