Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16060.1 | CDX73400 | AT3G55150.1 | 21798944 |
| AT1G16060.1 | CDX76117 | AT3G55150.1 | 21798944 |
| AT1G16060.1 | CDY02916 | AT3G55150.1 | 21798944 |
| AT1G16060.1 | CDY40204 | AT3G55150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35066 | Canola | nucleus | 91.67 | 53.33 |
| AT1G16060.1 | Thale cress | nucleus | 87.5 | 48.7 |
| CDX88560 | Canola | nucleus | 76.56 | 47.57 |
| KRH47304 | Soybean | nucleus | 70.31 | 46.55 |
| CDX87360 | Canola | nucleus | 75.0 | 45.86 |
| KRH44591 | Soybean | plastid | 70.83 | 43.45 |
| Solyc06g068570.2.1 | Tomato | nucleus | 66.67 | 40.63 |
| VIT_09s0018g01650.t01 | Wine grape | plastid | 70.31 | 37.4 |
| Solyc03g117720.2.1 | Tomato | nucleus, plastid | 68.23 | 35.31 |
| GSMUA_Achr5P04670_001 | Banana | nucleus | 66.15 | 35.28 |
| Os09t0423800-01 | Rice | nucleus | 65.62 | 34.52 |
| TraesCS6B01G153800.1 | Wheat | nucleus | 58.33 | 33.23 |
| TraesCS5D01G229400.1 | Wheat | nucleus | 67.71 | 32.83 |
| TraesCS5B01G220400.2 | Wheat | nucleus | 67.71 | 32.75 |
| TraesCS5A01G221600.1 | Wheat | nucleus | 66.67 | 32.32 |
| OQU89519 | Sorghum | plastid | 66.15 | 32.15 |
| Zm00001d020540_P002 | Maize | plastid | 68.75 | 32.12 |
| Os08t0442400-01 | Rice | nucleus | 69.79 | 31.98 |
| CDY18032 | Canola | nucleus | 46.88 | 31.03 |
| TraesCS6A01G125700.1 | Wheat | nucleus | 52.6 | 28.94 |
| CDY72251 | Canola | nucleus | 48.44 | 28.53 |
| CDY72154 | Canola | nucleus | 48.44 | 28.27 |
| CDX72655 | Canola | endoplasmic reticulum, golgi | 48.96 | 28.14 |
| CDY68782 | Canola | nucleus | 46.88 | 27.78 |
| CDX67595 | Canola | plastid | 59.9 | 27.64 |
| CDX78230 | Canola | plastid | 59.38 | 27.47 |
| CDX73488 | Canola | nucleus | 58.85 | 27.36 |
| Zm00001d032144_P001 | Maize | nucleus | 56.77 | 26.91 |
| OQU80549 | Sorghum | nucleus | 58.85 | 25.68 |
| CDX78387 | Canola | nucleus | 47.92 | 22.89 |
| CDX97022 | Canola | nucleus | 46.35 | 21.76 |
| CDY14577 | Canola | nucleus | 48.96 | 20.7 |
| CDX82142 | Canola | nucleus | 48.44 | 20.35 |
| CDY49856 | Canola | nucleus | 47.92 | 20.13 |
| CDY68823 | Canola | nucleus | 34.9 | 19.76 |
| CDX75673 | Canola | nucleus | 54.17 | 18.98 |
| CDX69324 | Canola | nucleus | 53.65 | 18.56 |
| CDY42263 | Canola | nucleus | 51.56 | 18.03 |
| CDY08784 | Canola | nucleus | 47.92 | 18.0 |
| CDX85454 | Canola | nucleus | 53.12 | 17.93 |
| CDY47943 | Canola | nucleus | 51.56 | 17.84 |
| CDY55941 | Canola | nucleus | 51.56 | 17.74 |
| CDY16924 | Canola | nucleus | 34.9 | 17.72 |
| CDY50260 | Canola | nucleus | 51.04 | 17.5 |
| CDY44027 | Canola | nucleus | 50.0 | 17.17 |
| CDX69826 | Canola | nucleus | 49.48 | 16.96 |
| CDY40102 | Canola | nucleus | 48.96 | 16.88 |
| CDY06387 | Canola | nucleus | 48.96 | 16.79 |
| CDY29623 | Canola | nucleus | 48.44 | 16.55 |
| CDY35571 | Canola | nucleus | 47.92 | 16.34 |
| CDY57915 | Canola | nucleus | 47.4 | 16.13 |
| CDX85757 | Canola | nucleus | 48.44 | 16.06 |
| CDY19597 | Canola | nucleus | 47.92 | 15.65 |
| CDY71263 | Canola | nucleus | 20.83 | 12.27 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078H659 | UniProt:A0A078H659 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY33356 | ProteinID:CDY33356 | ProteinID:CDY33356.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00054200001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF20 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EE5C0B | SEG:seg | : | : |
Description
BnaC05g12270DBnaC05g12270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H659]
Coordinates
chrLK032312:-:234573..236227
Molecular Weight (calculated)
22367.4 Da
IEP (calculated)
10.579
GRAVY (calculated)
-1.070
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEISRRSKK TSVENKTGDE TSASSVVPKT KRKRRSQPRD APPQRSSMYR GVTRHRWTGR YEAHLWDKNS WNETQSKKGR QVYLGEFVLE DAAARAYDLA
101: ALKYWGRDTV LNFPLCNYEE DIKDMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YGNLYKPSFI LT
101: ALKYWGRDTV LNFPLCNYEE DIKDMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YGNLYKPSFI LT
001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC
Arabidopsis Description
ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.