CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81764
CDY35097
CDY35101
CDY51002
CDY55883

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51190.1	CDX81764	AT1G16490.1	21245844
AT1G51190.1	CDY35097	AT1G16490.1	21245844
AT1G51190.1	CDY35101	AT1G16490.1	21245844
AT1G51190.1	CDY51002	AT1G16490.1	21245844
AT1G51190.1	CDY55883	AT1G16490.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72154	Canola	nucleus	96.01	95.14
CDY68782	Canola	nucleus	76.69	77.16
Bra018899.1-P	Field mustard	nucleus	95.09	55.46
AT1G51190.1	Thale cress	nucleus	91.1	52.29
CDY35571	Canola	nucleus	89.88	52.04
CDY29623	Canola	nucleus	88.96	51.6
CDY33356	Canola	nucleus	28.53	48.44
CDY18032	Canola	nucleus	39.88	44.83
CDY57915	Canola	nucleus	76.07	43.97
CDY06387	Canola	nucleus	74.54	43.39
VIT_06s0004g01800.t01	Wine grape	nucleus	71.47	42.36
Solyc11g061750.1.1	Tomato	nucleus	70.55	41.97
KRH24688	Soybean	nucleus	70.55	41.59
PGSC0003DMT400035354	Potato	nucleus	70.25	41.56
CDY19597	Canola	nucleus	74.23	41.16
KRH29690	Soybean	nucleus	70.55	38.46
CDX72655	Canola	endoplasmic reticulum, golgi	38.34	37.43
CDY14577	Canola	nucleus	47.24	33.92
CDX82142	Canola	nucleus	46.01	32.82
CDY49856	Canola	nucleus	45.4	32.39
CDX78387	Canola	nucleus	39.88	32.34
CDX88560	Canola	nucleus	29.45	31.07
CDX97022	Canola	nucleus	38.34	30.56
CDY08784	Canola	nucleus	47.55	30.33
CDX87360	Canola	nucleus	28.83	29.94
GSMUA_Achr2P05880_001	Banana	nucleus	52.15	29.72
CDY35066	Canola	nucleus	29.75	29.39
CDY42263	Canola	nucleus	49.39	29.33
CDX85454	Canola	nucleus	50.92	29.17
CDY55941	Canola	nucleus	49.08	28.67
CDY47943	Canola	nucleus	48.77	28.65
CDX75673	Canola	nucleus	46.32	27.55
CDY40102	Canola	nucleus	46.93	27.47
CDX69826	Canola	nucleus	46.63	27.14
CDX69324	Canola	nucleus	46.01	27.03
CDX85757	Canola	nucleus	46.93	26.42
CDY68823	Canola	nucleus	27.3	26.25
CDY44027	Canola	nucleus	44.79	26.12
CDY50260	Canola	nucleus	44.79	26.07
HORVU6Hr1G057060.3	Barley	nucleus	51.53	25.77
TraesCS6A01G229500.1	Wheat	nucleus	51.84	25.64
TraesCS6B01G252000.1	Wheat	nucleus	51.84	25.53
TraesCS6D01G205300.1	Wheat	nucleus	51.23	25.26
CDX73488	Canola	nucleus	31.9	25.18
CDY16924	Canola	nucleus	29.14	25.13
CDX78230	Canola	plastid	31.6	24.82
Os04t0504500-01	Rice	nucleus	50.0	24.77
Zm00001d017207_P001	Maize	nucleus	51.23	24.7
KXG30667	Sorghum	nucleus	51.53	24.35
TraesCS2D01G357600.1	Wheat	nucleus	48.77	24.27
TraesCS2B01G378100.1	Wheat	nucleus	49.08	24.24
HORVU2Hr1G087310.1	Barley	nucleus	48.77	24.13
CDX67595	Canola	plastid	30.67	24.04
CDY71263	Canola	nucleus	19.94	19.94
Os02t0614300-01	Rice	mitochondrion, nucleus	14.72	14.95

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078K367	UniProt:A0A078K367	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY72251	ProteinID:CDY72251	ProteinID:CDY72251.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00025976001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EE8BA5	SEG:seg	:	:

Description

BnaC06g40770DBnaC06g40770D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K367]

Coordinates

chrLK049742:-:36..1778

Molecular Weight (calculated)

35976.5 Da

IEP (calculated)

8.740

GRAVY (calculated)

-0.769

Length

326 amino acids

Sequence
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQTSHF NLGLVNDNMD NPFQNQEWNM TNPHGGGGEG GGVPKVADFL GVGKSEIHQA DHNLVPCNDI HQTNDSDYYF
101: QTNSLLPTVV TCASNTPNNY ELQESAHNLQ SLTLSMGSTR AAAAAAAAAA TVKTSPDDIS TDNSSSTTNT GGGAIVEATP RRTLETFGQR TSIYRGVTRH
201: RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GPSTTTNFPV TNYEKEVEEM KHMTRQESVA AIRRKSSGFS RGASMYRGVT
301: RHHQHGRWQA RIGRVAGNKD LYLGTF

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.